Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   U3P88_RS15130 Genome accession   NZ_CP140297
Coordinates   3154803..3155951 (+) Length   382 a.a.
NCBI ID   WP_033575082.1    Uniprot ID   -
Organism   Bacillus velezensis strain UMAF6639     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3149803..3160951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS15110 (U3P88_15110) - 3150201..3150884 (-) 684 WP_061861149.1 ABC transporter ATP-binding protein -
  U3P88_RS15115 (U3P88_15115) - 3150899..3152335 (-) 1437 WP_061861150.1 ABC transporter permease -
  U3P88_RS15120 (U3P88_15120) - 3152548..3153231 (+) 684 WP_007410267.1 response regulator transcription factor -
  U3P88_RS15125 (U3P88_15125) - 3153218..3154651 (+) 1434 WP_162492834.1 HAMP domain-containing sensor histidine kinase -
  U3P88_RS15130 (U3P88_15130) rapC 3154803..3155951 (+) 1149 WP_033575082.1 Rap family tetratricopeptide repeat protein Regulator
  U3P88_RS15135 (U3P88_15135) phrC 3155935..3156054 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  U3P88_RS15140 (U3P88_15140) - 3156202..3156297 (-) 96 WP_076983091.1 YjcZ family sporulation protein -
  U3P88_RS15145 (U3P88_15145) - 3156392..3157756 (-) 1365 WP_061861151.1 aspartate kinase -
  U3P88_RS15150 (U3P88_15150) ceuB 3158170..3159123 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  U3P88_RS15155 (U3P88_15155) - 3159113..3160060 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  U3P88_RS15160 (U3P88_15160) - 3160054..3160812 (+) 759 WP_061861152.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45491.70 Da        Isoelectric Point: 4.9916

>NTDB_id=913563 U3P88_RS15130 WP_033575082.1 3154803..3155951(+) (rapC) [Bacillus velezensis strain UMAF6639]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISSCFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=913563 U3P88_RS15130 WP_033575082.1 3154803..3155951(+) (rapC) [Bacillus velezensis strain UMAF6639]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGATTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTACTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTATTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCTCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.461

100

0.825
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568