Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   U3P88_RS14920 Genome accession   NZ_CP140297
Coordinates   3093616..3094014 (-) Length   132 a.a.
NCBI ID   WP_039252825.1    Uniprot ID   -
Organism   Bacillus velezensis strain UMAF6639     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3088616..3099014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS14895 (U3P88_14895) - 3088790..3089992 (+) 1203 WP_061861139.1 GTP-binding protein -
  U3P88_RS14900 (U3P88_14900) - 3090056..3091192 (+) 1137 WP_061861140.1 zinc-dependent alcohol dehydrogenase -
  U3P88_RS14905 (U3P88_14905) - 3091207..3091641 (+) 435 WP_007409358.1 RDD family protein -
  U3P88_RS14910 (U3P88_14910) - 3091713..3092036 (+) 324 WP_060675310.1 YckD family protein -
  U3P88_RS14915 (U3P88_14915) - 3092140..3093575 (+) 1436 Protein_2899 family 1 glycosylhydrolase -
  U3P88_RS14920 (U3P88_14920) nin/comJ 3093616..3094014 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  U3P88_RS14925 (U3P88_14925) nucA/comI 3094035..3094472 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  U3P88_RS14930 (U3P88_14930) hxlB 3094830..3095387 (-) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  U3P88_RS14935 (U3P88_14935) hxlA 3095384..3096019 (-) 636 WP_031378686.1 3-hexulose-6-phosphate synthase -
  U3P88_RS14940 (U3P88_14940) - 3096251..3096613 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14993.97 Da        Isoelectric Point: 4.9712

>NTDB_id=913560 U3P88_RS14920 WP_039252825.1 3093616..3094014(-) (nin/comJ) [Bacillus velezensis strain UMAF6639]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAASM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=913560 U3P88_RS14920 WP_039252825.1 3093616..3094014(-) (nin/comJ) [Bacillus velezensis strain UMAF6639]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCTCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758