Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   U3P88_RS08340 Genome accession   NZ_CP140297
Coordinates   1783601..1784245 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain UMAF6639     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778601..1789245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS08305 (U3P88_08305) - 1779786..1780217 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  U3P88_RS08310 (U3P88_08310) - 1780217..1780558 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  U3P88_RS08315 (U3P88_08315) - 1780551..1782032 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  U3P88_RS08320 (U3P88_08320) - 1782038..1782514 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  U3P88_RS08325 (U3P88_08325) - 1782514..1782798 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  U3P88_RS08330 (U3P88_08330) mnhG 1782782..1783156 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  U3P88_RS08335 (U3P88_08335) - 1783196..1783579 (-) 384 WP_061860832.1 hotdog fold thioesterase -
  U3P88_RS08340 (U3P88_08340) comA 1783601..1784245 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  U3P88_RS08345 (U3P88_08345) comP 1784326..1786677 (-) 2352 WP_015418104.1 histidine kinase Regulator
  U3P88_RS08350 (U3P88_08350) comX 1786655..1786825 (-) 171 WP_015418105.1 competence pheromone ComX -
  U3P88_RS08355 (U3P88_08355) - 1786822..1787751 (-) 930 WP_224462816.1 polyprenyl synthetase family protein -
  U3P88_RS08360 (U3P88_08360) degQ 1787882..1788022 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  U3P88_RS08365 (U3P88_08365) - 1788488..1788829 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=913537 U3P88_RS08340 WP_003152052.1 1783601..1784245(-) (comA) [Bacillus velezensis strain UMAF6639]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=913537 U3P88_RS08340 WP_003152052.1 1783601..1784245(-) (comA) [Bacillus velezensis strain UMAF6639]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864