Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   L6432_RS17990 Genome accession   NZ_AP025339
Coordinates   3579415..3579861 (-) Length   148 a.a.
NCBI ID   WP_020450096.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J25TS1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3574415..3584861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS17965 - 3575022..3575897 (-) 876 WP_020450091.1 transporter substrate-binding domain-containing protein -
  L6432_RS17970 - 3576081..3576632 (+) 552 WP_035337275.1 NAD(P)H-dependent oxidoreductase -
  L6432_RS17975 - 3576728..3577453 (+) 726 WP_020450093.1 AAA family ATPase -
  L6432_RS17980 - 3577523..3578959 (+) 1437 WP_020450094.1 glycoside hydrolase family 1 protein -
  L6432_RS17985 nin/comJ 3578999..3579397 (-) 399 WP_023855672.1 competence protein ComJ Regulator
  L6432_RS17990 nucA/comI 3579415..3579861 (-) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  L6432_RS17995 - 3580164..3580334 (+) 171 WP_023855671.1 hypothetical protein -
  L6432_RS18000 - 3580340..3581143 (+) 804 WP_025810788.1 serine/threonine protein kinase -
  L6432_RS18005 - 3581467..3582207 (-) 741 WP_020450098.1 ribonuclease YeeF family protein -
  L6432_RS18010 - 3582611..3584665 (+) 2055 WP_023855670.1 hydantoinase/oxoprolinase family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16280.32 Da        Isoelectric Point: 5.7093

>NTDB_id=91353 L6432_RS17990 WP_020450096.1 3579415..3579861(-) (nucA/comI) [Bacillus paralicheniformis strain J25TS1]
MDKIKSLLITLLAVAVVIIGIISGDFFTSEHQPSGRQNGSDYDEVLIFPSDRYPETGAHIRKAIKKGHSKICTIDRDGAD
ERRKESLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKILFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=91353 L6432_RS17990 WP_020450096.1 3579415..3579861(-) (nucA/comI) [Bacillus paralicheniformis strain J25TS1]
ATGGACAAAATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGCATTATATCCGGCGATTTTTT
CACTTCAGAACACCAGCCTTCAGGCCGGCAAAACGGCTCAGACTATGATGAAGTGCTGATTTTCCCGTCGGACCGCTATC
CTGAAACAGGCGCGCACATTCGAAAGGCCATCAAGAAAGGGCATTCTAAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGAATCGTTAAAAGATGTTCCTTCCAAATCGGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGTCCTTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGCACGAAAATACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.946

99.324

0.635

Multiple sequence alignment