Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   L6432_RS17985 Genome accession   NZ_AP025339
Coordinates   3578999..3579397 (-) Length   132 a.a.
NCBI ID   WP_023855672.1    Uniprot ID   A0AAW6KF42
Organism   Bacillus paralicheniformis strain J25TS1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3573999..3584397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS17955 - 3574007..3574168 (+) 162 WP_023855674.1 hypothetical protein -
  L6432_RS17960 - 3574327..3575010 (-) 684 WP_043054048.1 amino acid ABC transporter permease -
  L6432_RS17965 - 3575022..3575897 (-) 876 WP_020450091.1 transporter substrate-binding domain-containing protein -
  L6432_RS17970 - 3576081..3576632 (+) 552 WP_035337275.1 NAD(P)H-dependent oxidoreductase -
  L6432_RS17975 - 3576728..3577453 (+) 726 WP_020450093.1 AAA family ATPase -
  L6432_RS17980 - 3577523..3578959 (+) 1437 WP_020450094.1 glycoside hydrolase family 1 protein -
  L6432_RS17985 nin/comJ 3578999..3579397 (-) 399 WP_023855672.1 competence protein ComJ Regulator
  L6432_RS17990 nucA/comI 3579415..3579861 (-) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  L6432_RS17995 - 3580164..3580334 (+) 171 WP_023855671.1 hypothetical protein -
  L6432_RS18000 - 3580340..3581143 (+) 804 WP_025810788.1 serine/threonine protein kinase -
  L6432_RS18005 - 3581467..3582207 (-) 741 WP_020450098.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14928.99 Da        Isoelectric Point: 5.1700

>NTDB_id=91352 L6432_RS17985 WP_023855672.1 3578999..3579397(-) (nin/comJ) [Bacillus paralicheniformis strain J25TS1]
MIKKWEAEEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTAGEHAVSFEALDNTASLVEVRLNVQEQVPSFNRRVTVSF
DVLHGGVEIASVLSKKLSCDIPQGVYQLTCYTIMPDQSSTAKITYILDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=91352 L6432_RS17985 WP_023855672.1 3578999..3579397(-) (nin/comJ) [Bacillus paralicheniformis strain J25TS1]
TTGATCAAAAAGTGGGAAGCAGAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAAAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGCTACACAGCGGGAGAACACGCGGTCTCGTTTGAAGCTCTCGATA
ATACGGCATCATTAGTAGAAGTTCGTTTGAATGTCCAGGAACAGGTTCCCTCCTTTAACAGGCGCGTCACCGTTTCTTTC
GACGTGCTTCATGGCGGGGTCGAAATTGCAAGCGTCCTATCCAAGAAATTGTCATGCGACATCCCGCAAGGCGTCTATCA
GCTGACATGCTATACGATTATGCCTGATCAAAGCAGCACTGCGAAGATCACCTATATTCTCGATTTTAAACAGGCCTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

51.562

96.97

0.5

Multiple sequence alignment