Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   U2873_RS11750 Genome accession   NZ_CP140276
Coordinates   2282220..2283290 (-) Length   356 a.a.
NCBI ID   WP_144668081.1    Uniprot ID   -
Organism   Bacillus altitudinis strain F7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2277220..2288290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS11700 (U2873_11700) sipW 2277314..2277886 (-) 573 WP_017357979.1 signal peptidase I SipW -
  U2873_RS11705 (U2873_11705) tapA 2277936..2278463 (-) 528 WP_073413951.1 amyloid fiber anchoring/assembly protein TapA -
  U2873_RS11710 (U2873_11710) - 2278716..2279042 (+) 327 WP_056705243.1 DUF3889 domain-containing protein -
  U2873_RS11715 (U2873_11715) - 2279077..2279271 (-) 195 WP_008342191.1 YqzE family protein -
  U2873_RS11720 (U2873_11720) - 2279332..2279715 (-) 384 WP_035702776.1 competence type IV pilus minor pilin ComGG -
  U2873_RS11725 (U2873_11725) comGF 2279712..2280209 (-) 498 WP_041091745.1 competence type IV pilus minor pilin ComGF -
  U2873_RS11730 (U2873_11730) comGE 2280151..2280465 (-) 315 WP_138278722.1 competence type IV pilus minor pilin ComGE -
  U2873_RS11735 (U2873_11735) comGD 2280449..2280895 (-) 447 WP_047945463.1 competence type IV pilus minor pilin ComGD -
  U2873_RS11740 (U2873_11740) comGC 2280888..2281181 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  U2873_RS11745 (U2873_11745) comGB 2281199..2282239 (-) 1041 WP_322535858.1 competence type IV pilus assembly protein ComGB -
  U2873_RS11750 (U2873_11750) comGA 2282220..2283290 (-) 1071 WP_144668081.1 competence type IV pilus ATPase ComGA Machinery gene
  U2873_RS11755 (U2873_11755) - 2283746..2284618 (-) 873 WP_322535859.1 STAS domain-containing protein -
  U2873_RS11765 (U2873_11765) - 2284844..2285224 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  U2873_RS11770 (U2873_11770) - 2285437..2285679 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  U2873_RS11775 (U2873_11775) - 2285728..2286366 (-) 639 WP_322535860.1 MBL fold metallo-hydrolase -
  U2873_RS11780 (U2873_11780) - 2286527..2286700 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  U2873_RS11785 (U2873_11785) - 2286725..2287039 (-) 315 WP_008342314.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40334.66 Da        Isoelectric Point: 9.0449

>NTDB_id=913434 U2873_RS11750 WP_144668081.1 2282220..2283290(-) (comGA) [Bacillus altitudinis strain F7]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTVNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=913434 U2873_RS11750 WP_144668081.1 2282220..2283290(-) (comGA) [Bacillus altitudinis strain F7]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGATCATTGGCT
GTGATGCTAAGACGCGGTCAAGTGTTTGTTCGGCTCTCTACACTACCAACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACAGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGGAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGCATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACATTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACGGTGAATGAACTCGAACAAACAATGGTTGC
TATTGCTGCTCAGCGGTTAATCGAACTTGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.646