Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   U2873_RS11740 Genome accession   NZ_CP140276
Coordinates   2280888..2281181 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain F7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2275888..2286181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS11690 (U2873_11690) sinR 2276052..2276387 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  U2873_RS11695 (U2873_11695) tasA 2276455..2277255 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  U2873_RS11700 (U2873_11700) sipW 2277314..2277886 (-) 573 WP_017357979.1 signal peptidase I SipW -
  U2873_RS11705 (U2873_11705) tapA 2277936..2278463 (-) 528 WP_073413951.1 amyloid fiber anchoring/assembly protein TapA -
  U2873_RS11710 (U2873_11710) - 2278716..2279042 (+) 327 WP_056705243.1 DUF3889 domain-containing protein -
  U2873_RS11715 (U2873_11715) - 2279077..2279271 (-) 195 WP_008342191.1 YqzE family protein -
  U2873_RS11720 (U2873_11720) - 2279332..2279715 (-) 384 WP_035702776.1 competence type IV pilus minor pilin ComGG -
  U2873_RS11725 (U2873_11725) comGF 2279712..2280209 (-) 498 WP_041091745.1 competence type IV pilus minor pilin ComGF -
  U2873_RS11730 (U2873_11730) comGE 2280151..2280465 (-) 315 WP_138278722.1 competence type IV pilus minor pilin ComGE -
  U2873_RS11735 (U2873_11735) comGD 2280449..2280895 (-) 447 WP_047945463.1 competence type IV pilus minor pilin ComGD -
  U2873_RS11740 (U2873_11740) comGC 2280888..2281181 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  U2873_RS11745 (U2873_11745) comGB 2281199..2282239 (-) 1041 WP_322535858.1 competence type IV pilus assembly protein ComGB -
  U2873_RS11750 (U2873_11750) comGA 2282220..2283290 (-) 1071 WP_144668081.1 competence type IV pilus ATPase ComGA Machinery gene
  U2873_RS11755 (U2873_11755) - 2283746..2284618 (-) 873 WP_322535859.1 STAS domain-containing protein -
  U2873_RS11765 (U2873_11765) - 2284844..2285224 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  U2873_RS11770 (U2873_11770) - 2285437..2285679 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=913433 U2873_RS11740 WP_008342186.1 2280888..2281181(-) (comGC) [Bacillus altitudinis strain F7]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=913433 U2873_RS11740 WP_008342186.1 2280888..2281181(-) (comGC) [Bacillus altitudinis strain F7]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCGAATGGAAAGGCAATTTTTATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392