Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   U2873_RS11690 Genome accession   NZ_CP140276
Coordinates   2276052..2276387 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain F7     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2271052..2281387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS11670 (U2873_11670) gcvT 2271528..2272625 (-) 1098 WP_322535857.1 glycine cleavage system aminomethyltransferase GcvT -
  U2873_RS11675 (U2873_11675) - 2273187..2274857 (+) 1671 WP_249476733.1 DEAD/DEAH box helicase -
  U2873_RS11680 (U2873_11680) - 2274872..2275669 (+) 798 WP_171465575.1 YqhG family protein -
  U2873_RS11685 (U2873_11685) - 2275854..2276018 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  U2873_RS11690 (U2873_11690) sinR 2276052..2276387 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  U2873_RS11695 (U2873_11695) tasA 2276455..2277255 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  U2873_RS11700 (U2873_11700) sipW 2277314..2277886 (-) 573 WP_017357979.1 signal peptidase I SipW -
  U2873_RS11705 (U2873_11705) tapA 2277936..2278463 (-) 528 WP_073413951.1 amyloid fiber anchoring/assembly protein TapA -
  U2873_RS11710 (U2873_11710) - 2278716..2279042 (+) 327 WP_056705243.1 DUF3889 domain-containing protein -
  U2873_RS11715 (U2873_11715) - 2279077..2279271 (-) 195 WP_008342191.1 YqzE family protein -
  U2873_RS11720 (U2873_11720) - 2279332..2279715 (-) 384 WP_035702776.1 competence type IV pilus minor pilin ComGG -
  U2873_RS11725 (U2873_11725) comGF 2279712..2280209 (-) 498 WP_041091745.1 competence type IV pilus minor pilin ComGF -
  U2873_RS11730 (U2873_11730) comGE 2280151..2280465 (-) 315 WP_138278722.1 competence type IV pilus minor pilin ComGE -
  U2873_RS11735 (U2873_11735) comGD 2280449..2280895 (-) 447 WP_047945463.1 competence type IV pilus minor pilin ComGD -
  U2873_RS11740 (U2873_11740) comGC 2280888..2281181 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=913432 U2873_RS11690 WP_017357978.1 2276052..2276387(+) (sinR) [Bacillus altitudinis strain F7]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=913432 U2873_RS11690 WP_017357978.1 2276052..2276387(+) (sinR) [Bacillus altitudinis strain F7]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928