Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   U2873_RS10550 Genome accession   NZ_CP140276
Coordinates   2069064..2069699 (+) Length   211 a.a.
NCBI ID   WP_019744016.1    Uniprot ID   -
Organism   Bacillus altitudinis strain F7     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2064064..2074699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS10510 (U2873_10510) - 2064229..2065347 (+) 1119 WP_234823400.1 NADH-dependent flavin oxidoreductase -
  U2873_RS10515 (U2873_10515) - 2065396..2065902 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  U2873_RS10520 (U2873_10520) - 2066071..2066490 (+) 420 WP_322535790.1 Hsp20/alpha crystallin family protein -
  U2873_RS10525 (U2873_10525) - 2066512..2066964 (-) 453 WP_017359729.1 YppG family protein -
  U2873_RS10530 (U2873_10530) - 2067073..2067453 (-) 381 WP_225310452.1 YppE family protein -
  U2873_RS10535 (U2873_10535) - 2067503..2067736 (-) 234 WP_224563687.1 DUF5446 family protein -
  U2873_RS10540 (U2873_10540) sspM 2067933..2068037 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  U2873_RS10545 (U2873_10545) - 2068061..2069017 (-) 957 WP_322535791.1 DUF2515 domain-containing protein -
  U2873_RS10550 (U2873_10550) recU 2069064..2069699 (+) 636 WP_019744016.1 Holliday junction resolvase RecU Machinery gene
  U2873_RS10555 (U2873_10555) - 2069719..2072406 (+) 2688 WP_019744017.1 PBP1A family penicillin-binding protein -
  U2873_RS10560 (U2873_10560) - 2072442..2072951 (-) 510 WP_019744018.1 YpoC family protein -
  U2873_RS10565 (U2873_10565) nth 2072948..2073610 (-) 663 WP_008344602.1 endonuclease III -
  U2873_RS10570 (U2873_10570) - 2073628..2074332 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24322.62 Da        Isoelectric Point: 9.7583

>NTDB_id=913429 U2873_RS10550 WP_019744016.1 2069064..2069699(+) (recU) [Bacillus altitudinis strain F7]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHNHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=913429 U2873_RS10550 WP_019744016.1 2069064..2069699(+) (recU) [Bacillus altitudinis strain F7]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGTGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACAACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTTCTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAGGATGAATTAATGGAAGCAGGCCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.277

95.735

0.692