Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABK05_RS05580 Genome accession   NZ_AP027877
Coordinates   1127316..1128053 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2018-05-2CC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1122316..1133053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK05_RS05555 (VEE46_10810) tyrA 1122690..1123811 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABK05_RS05560 (VEE46_10820) pheA 1123854..1125014 (-) 1161 WP_338388148.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABK05_RS05565 pheL 1125113..1125160 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AABK05_RS05570 (VEE46_10830) raiA 1125264..1125605 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABK05_RS05575 (VEE46_10840) - 1125937..1127265 (+) 1329 WP_338388149.1 IS4-like element IS4 family transposase -
  AABK05_RS05580 (VEE46_10850) comL 1127316..1128053 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABK05_RS05585 (VEE46_10860) rluD 1128188..1129168 (+) 981 WP_000079091.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABK05_RS05590 (VEE46_10870) yfiH 1129165..1129896 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  AABK05_RS05595 (VEE46_10880) clpC 1130026..1132599 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=91342 AABK05_RS05580 WP_000197686.1 1127316..1128053(-) (comL) [Escherichia coli strain 2018-05-2CC]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=91342 AABK05_RS05580 WP_000197686.1 1127316..1128053(-) (comL) [Escherichia coli strain 2018-05-2CC]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTACAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment