Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SR852_RS08175 Genome accession   NZ_CP140161
Coordinates   1638271..1638909 (+) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus licheniformis strain ATCC 14580     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633271..1643909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS08150 (SR852_08150) - 1633613..1633960 (-) 348 WP_009329512.1 hypothetical protein -
  SR852_RS08155 (SR852_08155) degQ 1634446..1634586 (+) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  SR852_RS08160 (SR852_08160) - 1634775..1635644 (+) 870 WP_011198252.1 polyprenyl synthetase family protein -
  SR852_RS08165 (SR852_08165) comX 1635659..1635823 (+) 165 WP_011198251.1 competence pheromone ComX -
  SR852_RS08170 (SR852_08170) comP 1635863..1638184 (+) 2322 WP_044789735.1 ATP-binding protein Regulator
  SR852_RS08175 (SR852_08175) comA 1638271..1638909 (+) 639 WP_003184849.1 response regulator transcription factor Regulator
  SR852_RS08180 (SR852_08180) - 1638926..1639315 (+) 390 WP_003184847.1 hotdog fold thioesterase -
  SR852_RS08185 (SR852_08185) mnhG 1639355..1639729 (-) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  SR852_RS08190 (SR852_08190) - 1639713..1639997 (-) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  SR852_RS08195 (SR852_08195) - 1639997..1640473 (-) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  SR852_RS08200 (SR852_08200) - 1640479..1641957 (-) 1479 WP_003184838.1 Na+/H+ antiporter subunit D -
  SR852_RS08205 (SR852_08205) - 1641950..1642291 (-) 342 WP_003184836.1 Na(+)/H(+) antiporter subunit C -
  SR852_RS08210 (SR852_08210) - 1642291..1642722 (-) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=913219 SR852_RS08175 WP_003184849.1 1638271..1638909(+) (comA) [Bacillus licheniformis strain ATCC 14580]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=913219 SR852_RS08175 WP_003184849.1 1638271..1638909(+) (comA) [Bacillus licheniformis strain ATCC 14580]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACATGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTTCTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGT
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGACCTCTTGACTGAAAGGGAATGCCTGATTTTA
AAAGAAGTCGAAAAAGGCTACACAAATCAGGAAATTGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGCTT
GACTTCCGTATTCAGCAAGCTGAATGTAGGATCAAGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGTGTACTCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778