Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   SR852_RS06040 Genome accession   NZ_CP140161
Coordinates   1237347..1238081 (+) Length   244 a.a.
NCBI ID   WP_011198352.1    Uniprot ID   A0A415J866
Organism   Bacillus licheniformis strain ATCC 14580     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1232347..1243081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS06015 (SR852_06015) degS 1232646..1233803 (+) 1158 WP_003185733.1 sensor histidine kinase Regulator
  SR852_RS06020 (SR852_06020) degU 1233885..1234574 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  SR852_RS06025 (SR852_06025) - 1234694..1235536 (+) 843 WP_003185726.1 DegV family protein -
  SR852_RS06030 (SR852_06030) comFA 1235657..1237051 (+) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  SR852_RS06035 (SR852_06035) - 1237106..1237390 (+) 285 WP_003185718.1 late competence development ComFB family protein -
  SR852_RS06040 (SR852_06040) comFC 1237347..1238081 (+) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  SR852_RS06045 (SR852_06045) - 1238140..1238559 (+) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  SR852_RS06050 (SR852_06050) flgM 1238639..1238905 (+) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  SR852_RS06055 (SR852_06055) - 1238924..1239400 (+) 477 WP_003185711.1 flagellar protein FlgN -
  SR852_RS06060 (SR852_06060) flgK 1239416..1240939 (+) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  SR852_RS06065 (SR852_06065) flgL 1240950..1241861 (+) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  SR852_RS06070 (SR852_06070) - 1241911..1242477 (+) 567 WP_009329670.1 DUF6470 family protein -
  SR852_RS06075 (SR852_06075) fliW 1242499..1242930 (+) 432 WP_011198351.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27811.22 Da        Isoelectric Point: 9.4827

>NTDB_id=913212 SR852_RS06040 WP_011198352.1 1237347..1238081(+) (comFC) [Bacillus licheniformis strain ATCC 14580]
MKTRFAQAIEEGGNKLNCLICAAPLLHSLSWHSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQIPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=913212 SR852_RS06040 WP_011198352.1 1237347..1238081(+) (comFC) [Bacillus licheniformis strain ATCC 14580]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTCTCTCATGGCATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAATACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGACTTGT
ATACGACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(151-242)

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J866

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.321

97.131

0.508