Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   SR852_RS06015 Genome accession   NZ_CP140161
Coordinates   1232646..1233803 (+) Length   385 a.a.
NCBI ID   WP_003185733.1    Uniprot ID   -
Organism   Bacillus licheniformis strain ATCC 14580     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227646..1238803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS05990 (SR852_05990) tuaH 1227748..1228929 (+) 1182 WP_011198354.1 teichuronic acid biosynthesis protein TuaH -
  SR852_RS05995 (SR852_05995) - 1229060..1230124 (+) 1065 WP_003185739.1 glycosyltransferase family 4 protein -
  SR852_RS06000 (SR852_06000) - 1230244..1230618 (+) 375 WP_003185738.1 YunG family protein -
  SR852_RS06005 (SR852_06005) - 1230703..1231779 (-) 1077 WP_003185737.1 LCP family protein -
  SR852_RS06010 (SR852_06010) - 1231794..1232432 (-) 639 WP_011198353.1 YigZ family protein -
  SR852_RS06015 (SR852_06015) degS 1232646..1233803 (+) 1158 WP_003185733.1 sensor histidine kinase Regulator
  SR852_RS06020 (SR852_06020) degU 1233885..1234574 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  SR852_RS06025 (SR852_06025) - 1234694..1235536 (+) 843 WP_003185726.1 DegV family protein -
  SR852_RS06030 (SR852_06030) comFA 1235657..1237051 (+) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  SR852_RS06035 (SR852_06035) - 1237106..1237390 (+) 285 WP_003185718.1 late competence development ComFB family protein -
  SR852_RS06040 (SR852_06040) comFC 1237347..1238081 (+) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  SR852_RS06045 (SR852_06045) - 1238140..1238559 (+) 420 WP_003185715.1 TIGR03826 family flagellar region protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44636.36 Da        Isoelectric Point: 6.7863

>NTDB_id=913209 SR852_RS06015 WP_003185733.1 1232646..1233803(+) (degS) [Bacillus licheniformis strain ATCC 14580]
MSVSKMDSKVLDSIIMKMLKTVDGSKDEVFQIGEQSRQQYEGLVEELKQIKQQVNEVIDLGDRLEVHARHARNRLSEVSR
NFHKFSEEEIREAYEKAHKLQVELTMIQQREKQLREKRDDLERRLLGLQEIIERSEGLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDKGTEEGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEDYHGKAKIHFQCIGESEERRIAPRFEVALFRLAQEAVTNALKHSESTEIHVKVEV
TKDFVTLIIKDNGNGFDLKEVKGKKNKSFGLLGMKERVDLLEGSMTIDSKIGLGTFILIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=913209 SR852_RS06015 WP_003185733.1 1232646..1233803(+) (degS) [Bacillus licheniformis strain ATCC 14580]
GTGAGCGTTTCCAAAATGGACTCCAAAGTTTTAGATTCAATCATTATGAAGATGTTAAAAACGGTTGACGGGAGCAAGGA
TGAAGTCTTTCAAATCGGAGAGCAGTCCCGCCAGCAATACGAAGGCTTGGTAGAAGAGCTGAAACAGATTAAACAGCAGG
TCAACGAAGTCATCGATCTTGGAGACAGGCTGGAAGTGCATGCCCGCCATGCGCGGAACCGCTTGTCAGAGGTCAGCAGA
AACTTTCATAAATTCAGTGAAGAAGAGATTCGCGAAGCTTATGAAAAAGCCCACAAACTGCAGGTTGAACTGACAATGAT
CCAGCAGCGGGAAAAGCAGCTGAGAGAGAAGCGTGATGATCTGGAACGGCGCCTTTTGGGGCTTCAGGAAATCATCGAGC
GTTCAGAAGGGCTTGTCAGTCAGATTACCGTCGTCTTAAACTACTTAAATCAGGATCTGCGCCAGGTCGGCGTTCTCCTT
GAAGATGCGCAGGCCAAGCAGGATTTCGGACTGCGGATTATCGAAGCCCAGGAGGAAGAAAGAAAAAGGGTCTCAAGGGA
AATTCACGACGGTCCTGCGCAAATGCTGGCCAACGTTATGATGAGATCTGAACTGATCGAACGCATCTTCAGAGACAAAG
GAACAGAAGAAGGCTTTCAGGAAATTAAAAACCTCCGGCAAAACGTCAGAAATGCTCTTTATGAAGTCAGAAGAATCATT
TATGATTTAAGGCCGATGGCTTTAGACGATTTGGGATTGATACCGACGCTCAGAAAATACTTGAACACGATCGAAGATTA
TCATGGAAAAGCAAAGATTCATTTCCAATGCATCGGAGAATCCGAAGAAAGAAGAATAGCACCGCGGTTTGAGGTTGCAC
TATTCCGGCTTGCACAGGAAGCGGTGACAAACGCCTTAAAACACTCCGAATCAACTGAAATTCATGTTAAAGTAGAAGTG
ACAAAAGATTTTGTGACGCTGATTATCAAAGACAATGGAAACGGCTTTGACTTAAAAGAAGTAAAAGGCAAGAAGAACAA
ATCTTTCGGTCTGCTAGGTATGAAAGAAAGAGTCGATTTGCTCGAAGGCTCAATGACAATCGATTCGAAAATAGGTCTTG
GGACATTTATATTGATTAAAGTTCCACTGTCTTTGTAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(292-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

89.351

100

0.894