Detailed information NTG0913093

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SR882_RS00465
• Genome accession: NZ_CP140153
• Coordinates: 112263..113612 (+)
• Length: 449 a.a.
• NCBI ID: WP_322521400.1
• Uniprot ID: -
• Organism: Guyparkeria halophila strain ATCC 49870
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 107263..118612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SR882_RS00450 (SR882_00450)	ppk1	108166..110241 (+)	2076	WP_322521397.1	polyphosphate kinase 1	-
SR882_RS00455 (SR882_00455)	-	110368..110634 (+)	267	WP_322521398.1	PP0621 family protein	-
SR882_RS00460 (SR882_00460)	-	110631..112259 (+)	1629	WP_322521399.1	ATP-binding protein	-
SR882_RS00465 (SR882_00465)	pilR	112263..113612 (+)	1350	WP_322521400.1	sigma-54 dependent transcriptional regulator	Regulator
SR882_RS00470 (SR882_00470)	-	113712..114245 (+)	534	WP_322521401.1	DsrE family protein	-
SR882_RS00475 (SR882_00475)	sixA	114276..114782 (-)	507	WP_322521402.1	phosphohistidine phosphatase SixA	-
SR882_RS00480 (SR882_00480)	-	115027..115566 (+)	540	WP_322521403.1	FHA domain-containing protein	-
SR882_RS00485 (SR882_00485)	-	115574..117295 (+)	1722	WP_322521404.1	protein kinase domain-containing protein	-
SR882_RS00490 (SR882_00490)	-	117324..118361 (-)	1038	WP_322521405.1	LysM domain-containing protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49255.10 Da
• Isoelectric Point: 5.0821

>NTDB_id=913093 SR882_RS00465 WP_322521400.1 112263..113612(+) (pilR) [Guyparkeria halophila strain ATCC 49870]
MAYCLIVDDEPDIRTLVALFMKREGVPTLEAADLAEARERLDRHGEEIDLCLADMRLPDGNGLDLVDEIRTQRPDLPVAV
ITAHGQVEAAVRALKAGAFDFINKPIEQDTLRRLLRDARNLQPTPPTANAPTDAETDASSLIGQSRAMRQLREMIGRLAR
SQAPIFIQGESGTGKELVAREIHAHSSRAGGPFVPVNCGAIPSELIESELFGHHKGAFTGATRDKPGLFRAAEGGTLFLD
EIAELPLPLQVSLLRVLQERRVRPVGGTEEVPVDVRIVSASHQDLNEAVTDGRFRQDLFFRLNVIGLRVPPLRERLDDLP
ALAEAIVARLAARDHRPVPGIDPAVLQALATQSFPGNVRELENVLERAMALTDGERITAAAVAPHPMMTGEEEPASSLGA
CPGFIPETDEQHDVLAALQQTRWNRSEAARQLGMTLRQLRYRLQKWGLD

Nucleotide

• Length: 1350 bp

>NTDB_id=913093 SR882_RS00465 WP_322521400.1 112263..113612(+) (pilR) [Guyparkeria halophila strain ATCC 49870]
ATGGCGTACTGCCTGATCGTGGACGACGAGCCGGATATCCGCACGCTGGTCGCCCTGTTCATGAAACGCGAGGGCGTGCC
GACGCTGGAGGCCGCCGACCTGGCCGAGGCCCGCGAGCGGCTCGACCGTCACGGCGAGGAGATCGACCTGTGCCTGGCCG
ACATGCGCCTGCCCGACGGCAACGGCCTGGACCTGGTCGACGAGATCCGCACCCAGCGCCCCGATCTGCCGGTGGCGGTG
ATCACCGCGCATGGCCAGGTCGAGGCCGCGGTCCGCGCACTCAAGGCCGGCGCCTTCGATTTCATCAACAAGCCCATCGA
GCAGGACACCCTGCGGCGACTGCTGCGCGATGCGCGCAACCTGCAGCCCACCCCCCCGACGGCGAATGCCCCGACCGACG
CGGAGACCGACGCATCCAGCCTGATCGGCCAGTCACGTGCCATGCGCCAGCTGCGCGAGATGATCGGCCGCCTGGCCCGC
TCGCAGGCACCGATCTTCATCCAGGGCGAGTCCGGCACCGGCAAGGAGCTGGTGGCCCGGGAGATCCACGCCCACAGCAG
TCGCGCGGGCGGCCCCTTCGTGCCGGTCAACTGCGGCGCCATTCCCAGCGAACTGATCGAATCGGAGCTGTTCGGCCACC
ACAAGGGGGCGTTCACCGGCGCGACCCGCGACAAGCCGGGCCTGTTCCGCGCGGCCGAGGGAGGTACGCTGTTTCTGGAC
GAGATCGCCGAGCTGCCGCTACCCCTGCAGGTCTCGCTGCTGCGGGTGCTGCAGGAGCGTCGCGTGCGGCCGGTGGGTGG
CACCGAGGAGGTGCCGGTGGACGTGCGGATCGTGTCCGCCTCGCATCAGGACCTCAACGAGGCGGTGACCGACGGGCGCT
TTCGCCAGGACCTGTTCTTCCGCCTGAACGTCATCGGCCTGCGCGTGCCGCCGCTGCGCGAACGACTCGACGACCTGCCG
GCGCTGGCCGAGGCGATCGTCGCGCGGCTGGCCGCCCGCGACCATCGCCCGGTACCGGGCATCGATCCCGCCGTGCTGCA
GGCCCTGGCCACCCAGTCCTTCCCCGGCAACGTGCGGGAACTGGAAAACGTGCTGGAACGCGCCATGGCCCTGACCGACG
GCGAGCGGATCACCGCGGCGGCGGTCGCACCGCACCCGATGATGACCGGCGAGGAGGAACCCGCGTCTTCACTCGGCGCC
TGCCCCGGCTTCATCCCGGAGACCGACGAACAGCACGACGTGCTCGCCGCCCTGCAACAGACCCGCTGGAATCGCAGTGA
AGCGGCCCGCCAGCTGGGCATGACCCTGCGCCAGCTGCGCTACCGGTTGCAGAAATGGGGGCTCGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (5-115)

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Bacterial regulatory protein, Fis family (HTH_8) (415-446)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	53.407	100	0.541
pilR	Acinetobacter baumannii strain A118	46.336	100	0.479