Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   U1R71_RS18850 Genome accession   NZ_CP140123
Coordinates   3506091..3506780 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain SJTU2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3501091..3511780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS18815 (U1R71_18815) flgN 3501271..3501753 (-) 483 WP_014481048.1 flagellar protein FlgN -
  U1R71_RS18820 (U1R71_18820) flgM 3501769..3502035 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  U1R71_RS18825 (U1R71_18825) yvyF 3502116..3502535 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  U1R71_RS18830 (U1R71_18830) comFC 3502608..3503330 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  U1R71_RS18835 (U1R71_18835) comFB 3503294..3503590 (-) 297 WP_003227989.1 late competence protein ComFB -
  U1R71_RS18840 (U1R71_18840) comFA 3503650..3505041 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  U1R71_RS18845 (U1R71_18845) fakBA 3505148..3505993 (-) 846 WP_014481053.1 DegV family protein -
  U1R71_RS18850 (U1R71_18850) degU 3506091..3506780 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  U1R71_RS18855 (U1R71_18855) degS 3506863..3508020 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  U1R71_RS18860 (U1R71_18860) - 3508237..3508890 (+) 654 WP_014481055.1 YigZ family protein -
  U1R71_RS18865 (U1R71_18865) - 3508890..3509882 (+) 993 WP_014481056.1 LCP family protein -
  U1R71_RS18870 (U1R71_18870) - 3510480..3510944 (+) 465 WP_225910700.1 hypothetical protein -
  U1R71_RS18875 (U1R71_18875) - 3510993..3511448 (+) 456 WP_014481057.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=912957 U1R71_RS18850 WP_014481054.1 3506091..3506780(-) (degU) [Bacillus subtilis strain SJTU2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=912957 U1R71_RS18850 WP_014481054.1 3506091..3506780(-) (degU) [Bacillus subtilis strain SJTU2]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996