Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   U1R71_RS18830 Genome accession   NZ_CP140123
Coordinates   3502608..3503330 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain SJTU2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3497608..3508330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS18795 (U1R71_18795) fliW 3497748..3498179 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  U1R71_RS18800 (U1R71_18800) yviE 3498200..3498775 (-) 576 WP_014481045.1 DUF6470 family protein -
  U1R71_RS18805 (U1R71_18805) flgL 3498822..3499718 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  U1R71_RS18810 (U1R71_18810) flgK 3499729..3501252 (-) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  U1R71_RS18815 (U1R71_18815) flgN 3501271..3501753 (-) 483 WP_014481048.1 flagellar protein FlgN -
  U1R71_RS18820 (U1R71_18820) flgM 3501769..3502035 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  U1R71_RS18825 (U1R71_18825) yvyF 3502116..3502535 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  U1R71_RS18830 (U1R71_18830) comFC 3502608..3503330 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  U1R71_RS18835 (U1R71_18835) comFB 3503294..3503590 (-) 297 WP_003227989.1 late competence protein ComFB -
  U1R71_RS18840 (U1R71_18840) comFA 3503650..3505041 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  U1R71_RS18845 (U1R71_18845) fakBA 3505148..3505993 (-) 846 WP_014481053.1 DegV family protein -
  U1R71_RS18850 (U1R71_18850) degU 3506091..3506780 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  U1R71_RS18855 (U1R71_18855) degS 3506863..3508020 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=912955 U1R71_RS18830 WP_014481051.1 3502608..3503330(-) (comFC) [Bacillus subtilis strain SJTU2]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=912955 U1R71_RS18830 WP_014481051.1 3502608..3503330(-) (comFC) [Bacillus subtilis strain SJTU2]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992