Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   U1R71_RS16185 Genome accession   NZ_CP140123
Coordinates   3011931..3012575 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SJTU2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3006931..3017575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS16150 (U1R71_16150) mrpB 3008123..3008554 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  U1R71_RS16155 (U1R71_16155) mrpC 3008554..3008895 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  U1R71_RS16160 (U1R71_16160) mrpD 3008888..3010369 (+) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  U1R71_RS16165 (U1R71_16165) mrpE 3010375..3010851 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  U1R71_RS16170 (U1R71_16170) mrpF 3010851..3011135 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  U1R71_RS16175 (U1R71_16175) mnhG 3011119..3011493 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  U1R71_RS16180 (U1R71_16180) yuxO 3011532..3011912 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  U1R71_RS16185 (U1R71_16185) comA 3011931..3012575 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  U1R71_RS16190 (U1R71_16190) comP 3012656..3014617 (-) 1962 WP_276569535.1 histidine kinase Regulator
  U1R71_RS16195 (U1R71_16195) - 3014800..3015924 (+) 1125 WP_031601042.1 IS4-like element IS4Bsu1 family transposase -
  U1R71_RS16200 (U1R71_16200) - 3016054..3016383 (-) 330 WP_322808282.1 hypothetical protein -
  U1R71_RS16205 (U1R71_16205) comX 3016399..3016620 (-) 222 WP_014480704.1 competence pheromone ComX -
  U1R71_RS16210 (U1R71_16210) - 3016622..3017485 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=912949 U1R71_RS16185 WP_003220716.1 3011931..3012575(-) (comA) [Bacillus subtilis strain SJTU2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=912949 U1R71_RS16185 WP_003220716.1 3011931..3012575(-) (comA) [Bacillus subtilis strain SJTU2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1