Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Regulator
Locus tag   U1R71_RS16190 Genome accession   NZ_CP140123
Coordinates   3012656..3014617 (-) Length   653 a.a.
NCBI ID   WP_276569535.1    Uniprot ID   -
Organism   Bacillus subtilis strain SJTU2     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3014800..3015924 3012656..3014617 flank 183


Gene organization within MGE regions


Location: 3012656..3015924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS16190 (U1R71_16190) comP 3012656..3014617 (-) 1962 WP_276569535.1 histidine kinase Regulator
  U1R71_RS16195 (U1R71_16195) - 3014800..3015924 (+) 1125 WP_031601042.1 IS4-like element IS4Bsu1 family transposase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 76095.33 Da        Isoelectric Point: 8.9166

>NTDB_id=912950 U1R71_RS16190 WP_276569535.1 3012656..3014617(-) (comP) [Bacillus subtilis strain SJTU2]
MYLIPVISYSICLFCIFFIYRINKVRKSTSAYILILFLLFVSVAYVSACGARRGEEISTYLLVLTLVSCPVLYIHFIYKY
FIELGTKLFEKKILIIMYMLPLINLLLEDVLSNRLKSSAFLSNLNLISFFVLVLTVSILIHKGIRKFKQKEQKSILKVLA
YTNIFSFSPFIVFFAVPYVFFEKYVSPFSLAAFTLVIPFSLVYQFMTNRLYNIDFVVGRLKYYGFLAITPTIIVVTIFNY
IQQPKDIFYLVKLTIAIYVLMFAVFYFKEIIDFRFKLKRFTEKFNYQDGIFKFTQLIKQASSVDQVLNHFKNTILEVLNI
DNACVYDNSKGEITLLSKNNFKDLTYKNHEQYVKNFSGDIGKIKEFKQGFIIKIGERGDRSFLVLCFSSYNTFKLTRDEI
AWLQTLAFYTNVSLENVMKIEELMVHLEDLKQQESNPVWLKKLMYTIEEKQRSDLARDLHDSVLQDLISLKRQCELFLGD
FKKGDNPCREEVQDKLVQMNEQMSDVISMTRETCHELRPQLLYDLGLVKALSKLVAQQQERVPFHIRLNTGRFTASLDLD
SQLNLYRIIQEFLSNAVKHSQATDVLIMLISIQNKIVLHYEDDGVGFDQEKNTEHSMSMGLSGIKERVRALDGRLRIETS
EGKGFKADIEIEL

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=912950 U1R71_RS16190 WP_276569535.1 3012656..3014617(-) (comP) [Bacillus subtilis strain SJTU2]
ATGTATCTCATTCCTGTAATATCTTATTCAATCTGTTTATTTTGTATATTTTTTATTTATAGAATAAATAAAGTAAGAAA
ATCAACTTCTGCTTATATTTTAATTTTATTTTTGTTATTTGTATCAGTAGCGTATGTAAGTGCATGTGGAGCAAGAAGAG
GTGAAGAGATAAGCACTTATCTGCTTGTTCTTACTTTAGTCAGTTGTCCGGTGTTATATATTCATTTTATATATAAATAC
TTTATAGAATTAGGAACAAAGTTATTCGAAAAGAAGATTTTAATCATTATGTATATGCTCCCGCTAATAAATCTTTTATT
AGAGGACGTTCTGAGTAATAGATTAAAATCTTCGGCTTTTTTGTCTAATCTGAATTTGATTTCATTTTTTGTCCTAGTTC
TTACTGTATCGATTCTTATCCATAAAGGGATAAGAAAATTTAAACAAAAAGAGCAAAAGTCAATTTTGAAAGTCCTTGCT
TATACAAATATCTTTTCTTTCAGTCCGTTTATTGTCTTTTTTGCTGTTCCATATGTGTTTTTCGAGAAGTATGTCTCACC
TTTTAGTTTGGCTGCTTTTACACTTGTTATACCTTTTTCTTTAGTATATCAATTTATGACTAATAGACTTTATAATATCG
ACTTTGTTGTGGGGCGGCTTAAGTACTACGGTTTTTTAGCCATTACACCTACTATTATCGTAGTGACCATCTTTAATTAC
ATTCAGCAACCAAAGGATATCTTTTATTTAGTTAAACTAACAATTGCAATATATGTTCTTATGTTTGCCGTTTTTTACTT
TAAAGAAATCATTGATTTTCGTTTCAAGTTGAAAAGATTTACAGAGAAATTTAATTATCAAGATGGGATTTTTAAATTTA
CTCAGTTGATTAAGCAAGCATCATCAGTAGATCAAGTACTTAATCACTTTAAAAATACAATCCTAGAAGTATTAAACATA
GATAATGCTTGCGTGTATGATAATTCTAAAGGGGAAATCACCCTTCTTAGTAAGAACAACTTTAAAGATCTGACTTATAA
AAATCATGAGCAATATGTGAAAAATTTTTCTGGTGATATCGGTAAAATTAAAGAGTTTAAACAAGGTTTTATTATTAAAA
TAGGTGAACGAGGAGACAGATCATTTTTAGTACTCTGTTTCTCAAGTTATAATACTTTTAAGTTAACAAGGGATGAAATT
GCATGGCTTCAAACATTAGCATTTTATACAAATGTCTCATTGGAAAACGTTATGAAAATCGAAGAATTGATGGTGCATCT
TGAGGATTTAAAACAACAAGAATCCAACCCCGTATGGCTCAAAAAACTCATGTACACGATCGAGGAAAAACAACGCTCGG
ATCTCGCCCGCGATCTCCACGATTCGGTTCTTCAGGATTTGATTTCCTTAAAACGCCAGTGTGAGCTGTTTTTGGGTGAT
TTTAAGAAGGGTGATAATCCGTGCCGTGAAGAGGTGCAGGACAAGCTTGTACAGATGAATGAGCAGATGTCTGATGTGAT
TTCGATGACGAGGGAGACGTGTCATGAGCTGCGGCCGCAGCTTCTGTATGATCTTGGGCTGGTCAAGGCGCTGTCGAAGC
TGGTGGCGCAGCAGCAGGAGCGGGTTCCGTTTCATATCCGTTTAAATACCGGGAGATTTACGGCTTCCCTTGATCTGGAT
TCGCAGCTGAATTTGTACCGGATCATTCAAGAGTTTCTGTCTAATGCGGTCAAGCACTCTCAGGCGACGGATGTGCTGAT
TATGCTCATCAGTATTCAAAACAAAATCGTTCTTCATTATGAGGATGATGGCGTAGGATTTGATCAGGAAAAGAATACTG
AGCATTCCATGAGCATGGGGCTTTCTGGCATTAAGGAGAGAGTCAGGGCTTTAGATGGGCGCCTTCGGATTGAAACAAGT
GAAGGAAAGGGCTTTAAGGCTGATATTGAAATCGAATTGTAA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(452-522)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(563-649)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

61.586

98.469

0.606