Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABII15_RS17150 Genome accession   NZ_CP159534
Coordinates   3808208..3809626 (+) Length   472 a.a.
NCBI ID   WP_353943200.1    Uniprot ID   A0AAU8ITR6
Organism   Streptomyces sp. HUAS MG91     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3803208..3814626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABII15_RS17130 (ABII15_17130) - 3803475..3804299 (-) 825 WP_353943196.1 sugar phosphate isomerase/epimerase -
  ABII15_RS17135 (ABII15_17135) - 3804434..3805366 (-) 933 WP_353943197.1 Ppx/GppA phosphatase family protein -
  ABII15_RS17140 (ABII15_17140) - 3805447..3806298 (+) 852 WP_353943198.1 hypothetical protein -
  ABII15_RS17145 (ABII15_17145) - 3806338..3808041 (-) 1704 WP_353943199.1 hypothetical protein -
  ABII15_RS17150 (ABII15_17150) radA 3808208..3809626 (+) 1419 WP_353943200.1 DNA repair protein RadA Machinery gene
  ABII15_RS17155 (ABII15_17155) disA 3809720..3810844 (+) 1125 WP_353943201.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ABII15_RS17160 (ABII15_17160) - 3810966..3811790 (-) 825 WP_353943202.1 hypothetical protein -
  ABII15_RS17165 (ABII15_17165) - 3811979..3812638 (+) 660 WP_353943203.1 phosphatase PAP2 family protein -
  ABII15_RS17170 (ABII15_17170) - 3812913..3813827 (+) 915 WP_353943204.1 A/G-specific adenine glycosylase -
  ABII15_RS17175 (ABII15_17175) - 3814026..3814580 (+) 555 WP_353943205.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 49995.16 Da        Isoelectric Point: 8.0093

>NTDB_id=912707 ABII15_RS17150 WP_353943200.1 3808208..3809626(+) (radA) [Streptomyces sp. HUAS MG91]
MAARTKSANSGKQRPSYRCTECGWQTAKWLGRCAECQAWGTIEEYGAPAVRTTAPGRVTTSALPIGEVDGRQATARTTGV
PELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASEQHKTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLS
AVLGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKEGTIAGPRLLEHLVDVV
LNFEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPPGMKVLEVADIGDALRVLPKSRRREAPRETEDRR

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=912707 ABII15_RS17150 WP_353943200.1 3808208..3809626(+) (radA) [Streptomyces sp. HUAS MG91]
ATGGCTGCCCGTACCAAATCCGCGAACAGCGGCAAGCAACGACCGTCGTACCGCTGCACCGAGTGCGGCTGGCAGACGGC
CAAGTGGCTGGGCCGCTGCGCCGAGTGCCAGGCCTGGGGGACGATCGAGGAGTACGGCGCCCCTGCGGTGCGCACGACCG
CGCCCGGCCGCGTCACGACCTCCGCCCTGCCCATCGGCGAGGTCGACGGCCGGCAGGCCACGGCCCGCACCACCGGCGTG
CCCGAGCTGGACCGGGTGCTCGGCGGCGGCCTGGTGCCCGGCGCGGTGGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAA
GTCCACGCTGCTGCTGGACGTCGCCGCGAAGTCGGCGAGCGAGCAGCACAAGACGCTCTATGTGACGGGCGAGGAGTCGG
CGTCCCAGGTGCGGCTGCGCGCGGACCGCATCCACGCCATCGACGACCATCTGTACCTGGCGGCCGAGACGGACCTGTCC
GCCGTCCTCGGCCACCTGGACGCGGTGAAGCCGTCGCTGCTGGTCCTGGACTCCGTACAGACGGTGGCCTCGCCGGAGAT
CGACGGGGCGCCGGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGT
CCACGCTGCTCGTGGGCCATGTCACCAAGGAGGGCACCATCGCGGGCCCGCGCCTCCTGGAGCACCTGGTCGACGTGGTG
CTGAACTTCGAGGGCGACCGGCACGCGCGGCTGCGCCTGGTCCGCGGCGTCAAGAACCGGTACGGGACGACGGACGAGGT
CGGCTGCTTCGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCCAGCGGCCTGTTCCTGACCCGGCGCGACGAGC
CGGTGCCGGGGACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGAC
TCGCAGATCCCCTCTCCCCGGCGCACCACGTCGGGCCTGGAGACCTCCCGTGTCTCGATGATGCTGGCGGTTCTCGAACA
GCGGGGCAAAATCAGCGCCTTGGGCAAAAGGGACATCTATTCCGCGACGGTCGGCGGCGTGAAGCTCACCGAGCCCGCGG
CCGACCTCGCGATCGCGCTGGCGCTGGCCTCCGCGGCGAGCGACACCCCGCTGCCCAAGAACCTGGTGGCGATCGGAGAA
GTGGGCCTGGCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCCGGCTCGCCGAGGCGCACCGGCTCGGCTTCACCCA
TGCCCTCGTACCGGGCGATCCGGGCAAGGTCCCGCCCGGTATGAAGGTCCTGGAAGTCGCCGATATAGGGGACGCGCTGC
GGGTGCTGCCGAAGAGCCGTCGCCGAGAGGCCCCACGGGAGACGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)

Subunit ChlI of Mg-chelatase (ChlI)

(373-431)

AAA domain (AAA_25)

(81-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAU8ITR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.653

95.127

0.415
  radA Streptococcus mitis NCTC 12261

43.653

95.127

0.415
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

95.763

0.413
  radA Streptococcus pneumoniae TIGR4

43.207

95.127

0.411
  radA Streptococcus pneumoniae D39

43.207

95.127

0.411
  radA Streptococcus pneumoniae Rx1

43.207

95.127

0.411
  radA Streptococcus pneumoniae R6

43.207

95.127

0.411