Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABK12_RS08590 Genome accession   NZ_AP027873
Coordinates   1776102..1776839 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2018-02-2CC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1771102..1781839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK12_RS08575 (VEE78_16540) clpC 1771556..1774129 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AABK12_RS08580 (VEE78_16550) yfiH 1774259..1774990 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  AABK12_RS08585 (VEE78_16560) rluD 1774987..1775967 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABK12_RS08590 (VEE78_16570) comL 1776102..1776839 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABK12_RS08595 (VEE78_16580) raiA 1777110..1777451 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABK12_RS08600 pheL 1777555..1777602 (+) 48 WP_010723158.1 phe operon leader peptide -
  AABK12_RS08605 (VEE78_16590) pheA 1777701..1778861 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABK12_RS08610 (VEE78_16600) tyrA 1778904..1780025 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABK12_RS08615 (VEE78_16610) aroF 1780036..1781106 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AABK12_RS08620 (VEE78_16620) yfiL 1781316..1781648 (+) 333 WP_135561051.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=91265 AABK12_RS08590 WP_000197686.1 1776102..1776839(+) (comL) [Escherichia coli strain 2018-02-2CC]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=91265 AABK12_RS08590 WP_000197686.1 1776102..1776839(+) (comL) [Escherichia coli strain 2018-02-2CC]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment