Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   U0N78_RS11770 Genome accession   NZ_CP140109
Coordinates   588941..589468 (+) Length   175 a.a.
NCBI ID   WP_374679402.1    Uniprot ID   -
Organism   Streptococcus suis strain 2022WUSS148     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 583941..594468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0N78_RS02910 (U0N78_02910) - 584379..584906 (+) 528 WP_024378616.1 metallophosphoesterase -
  U0N78_RS02915 (U0N78_02915) cbpB 584903..585361 (+) 459 WP_024418592.1 cyclic-di-AMP-binding protein CbpB -
  U0N78_RS02920 (U0N78_02920) xerD 585358..586089 (+) 732 WP_044762042.1 site-specific tyrosine recombinase XerD -
  U0N78_RS02925 (U0N78_02925) - 586089..586808 (+) 720 WP_044768295.1 segregation/condensation protein A -
  U0N78_RS02930 (U0N78_02930) scpB 586792..587361 (+) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  U0N78_RS02935 (U0N78_02935) - 587351..588082 (+) 732 WP_024375836.1 pseudouridine synthase -
  U0N78_RS02940 (U0N78_02940) yidD 588082..588321 (+) 240 WP_024375837.1 membrane protein insertion efficiency factor YidD -
  U0N78_RS11770 oppA 588941..589468 (+) 528 WP_374679402.1 hypothetical protein Regulator
  U0N78_RS02945 (U0N78_02945) oppA 589486..590691 (+) 1206 WP_374679403.1 ABC transporter substrate-binding protein Regulator
  U0N78_RS02950 (U0N78_02950) - 591077..591622 (+) 546 WP_029176242.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  U0N78_RS02955 (U0N78_02955) - 592067..592624 (+) 558 WP_256768910.1 ECF transporter S component -
  U0N78_RS02960 (U0N78_02960) - 592649..593302 (+) 654 WP_172034693.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19049.59 Da        Isoelectric Point: 4.3768

>NTDB_id=912602 U0N78_RS11770 WP_374679402.1 588941..589468(+) (oppA) [Streptococcus suis strain 2022WUSS148]
MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFKSEVTHEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
GMVDISMFGYDSARTLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQVLRRLMIIR

Nucleotide


Download         Length: 528 bp        

>NTDB_id=912602 U0N78_RS11770 WP_374679402.1 588941..589468(+) (oppA) [Streptococcus suis strain 2022WUSS148]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCTTGTCAAACTAAAGA
AAAGACGAGTGATGTTGCTCTGACATTTAAATCAGAAGTGACACACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAATTATCGCAGACGGCGGTAGACTCAACCTTTGCA
GGCATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTACGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGTGTTAAGAAGGTTGATGATTATACGGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

57.576

94.286

0.543