Detailed information    

insolico Bioinformatically predicted

Overview


Name   oppA   Type   Regulator
Locus tag   U0N78_RS02945 Genome accession   NZ_CP140109
Coordinates   589486..590691 (+) Length   401 a.a.
NCBI ID   WP_374679403.1    Uniprot ID   -
Organism   Streptococcus suis strain 2022WUSS148     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 584486..595691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0N78_RS02915 (U0N78_02915) cbpB 584903..585361 (+) 459 WP_024418592.1 cyclic-di-AMP-binding protein CbpB -
  U0N78_RS02920 (U0N78_02920) xerD 585358..586089 (+) 732 WP_044762042.1 site-specific tyrosine recombinase XerD -
  U0N78_RS02925 (U0N78_02925) - 586089..586808 (+) 720 WP_044768295.1 segregation/condensation protein A -
  U0N78_RS02930 (U0N78_02930) scpB 586792..587361 (+) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  U0N78_RS02935 (U0N78_02935) - 587351..588082 (+) 732 WP_024375836.1 pseudouridine synthase -
  U0N78_RS02940 (U0N78_02940) yidD 588082..588321 (+) 240 WP_024375837.1 membrane protein insertion efficiency factor YidD -
  U0N78_RS11770 oppA 588941..589468 (+) 528 WP_374679402.1 hypothetical protein Regulator
  U0N78_RS02945 (U0N78_02945) oppA 589486..590691 (+) 1206 WP_374679403.1 ABC transporter substrate-binding protein Regulator
  U0N78_RS02950 (U0N78_02950) - 591077..591622 (+) 546 WP_029176242.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  U0N78_RS02955 (U0N78_02955) - 592067..592624 (+) 558 WP_256768910.1 ECF transporter S component -
  U0N78_RS02960 (U0N78_02960) - 592649..593302 (+) 654 WP_172034693.1 phosphatase PAP2 family protein -
  U0N78_RS02965 (U0N78_02965) - 593688..595487 (-) 1800 WP_172013841.1 acyltransferase family protein -

Sequence


Protein


Download         Length: 401 a.a.        Molecular weight: 45049.32 Da        Isoelectric Point: 4.3610

>NTDB_id=912571 U0N78_RS02945 WP_374679403.1 589486..590691(+) (oppA) [Streptococcus suis strain 2022WUSS148]
MSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVKEIVNGESVTYVPNEYYFKGKVKLDSYRIDI
VSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFNLGKYDDASGKNVTNPNAKMNNVKLRQAMGY
ALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYNPEKAKKLLDEAGYKDVDGDGMREDAEGKPLTISVAAQKS
TETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYLAAWIAGLDPDPTSLWGPEAMYNYTRFVSDE
NTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNKRVKYYDVYIGSDSKSGHENLELTAEKGIAA
E

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=912571 U0N78_RS02945 WP_374679403.1 589486..590691(+) (oppA) [Streptococcus suis strain 2022WUSS148]
ATGTCTCCATCCATGATGTATGCTGGTGGTGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAGACATTGCAGT
CAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGTCCTTATAAGGTCAAGGAAATTGTCA
ATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAGGATTGATATT
GTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACCAGTACGAATC
TTACAAGGACTTATCAAATATTACTTTGCTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAATCTTGGTAAGT
ACGATGATGCTAGTGGTAAGAATGTGACCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGCAATGGGATAT
GCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTATCTCTTTCTT
TGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATAATCCTGAAAAGGCTAAAAAACTTCTCGATGAGGCAGGAT
ATAAAGACGTAGATGGAGACGGTATGCGTGAAGATGCTGAAGGAAAACCGCTTACCATCAGTGTTGCAGCACAGAAATCA
ACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAACTCTATACAGG
AAGAACTATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTTGCTGCTTGGA
TTGCCGGCCTAGATCCAGACCCGACATCATTGTGGGGACCTGAAGCCATGTACAACTATACTCGCTTCGTTTCAGATGAA
AACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAAAAAAATATTGAAAACTACAAAGCTTGGCA
AGAATATGCATTCGAGCAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAACGCGTTAAAT
ATTACGACGTTTATATCGGTTCGGATAGTAAATCAGGACATGAAAATCTTGAGTTGACTGCGGAAAAAGGGATTGCAGCA
GAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

68.812

100

0.693