Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   U0N78_RS02780 Genome accession   NZ_CP140109
Coordinates   557805..558494 (+) Length   229 a.a.
NCBI ID   WP_256769091.1    Uniprot ID   -
Organism   Streptococcus suis strain 2022WUSS148     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 552805..563494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0N78_RS02755 (U0N78_02755) - 553142..554485 (+) 1344 WP_024380515.1 DEAD/DEAH box helicase -
  U0N78_RS02760 (U0N78_02760) - 554503..554727 (+) 225 WP_256769095.1 DUF4059 family protein -
  U0N78_RS02765 (U0N78_02765) trxB 554739..555656 (+) 918 WP_256769094.1 thioredoxin-disulfide reductase -
  U0N78_RS02770 (U0N78_02770) - 555666..556205 (+) 540 WP_256769093.1 YceD family protein -
  U0N78_RS02775 (U0N78_02775) gndA 556295..557722 (+) 1428 WP_256769092.1 NADP-dependent phosphogluconate dehydrogenase -
  U0N78_RS02780 (U0N78_02780) covR 557805..558494 (+) 690 WP_256769091.1 response regulator transcription factor Regulator
  U0N78_RS02785 (U0N78_02785) - 558964..560094 (+) 1131 WP_032511046.1 AI-2E family transporter -
  U0N78_RS02790 (U0N78_02790) nrdR 560166..560657 (+) 492 WP_105156551.1 transcriptional regulator NrdR -
  U0N78_RS02795 (U0N78_02795) - 560644..561795 (+) 1152 WP_256769090.1 replication initiation/membrane attachment protein -
  U0N78_RS02800 (U0N78_02800) dnaI 561795..562694 (+) 900 WP_256769089.1 primosomal protein DnaI -
  U0N78_RS02805 (U0N78_02805) - 562691..563410 (+) 720 WP_256769088.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26263.07 Da        Isoelectric Point: 5.6989

>NTDB_id=912570 U0N78_RS02780 WP_256769091.1 557805..558494(+) (covR) [Streptococcus suis strain 2022WUSS148]
MAKKILIAGRERNLSHFVSMELQKKEYLVDYASTGKEALQLAHETDFDLILMSFQLSDMSSKDLSRELLAIKPASVIIVA
IDSADVSQYGEEVLSYAVSYVVKPFVISELVEQISSIFRGRDFIDTNCKQVHLHAAYRDLKIDFQNRTVTRGEELISLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=912570 U0N78_RS02780 WP_256769091.1 557805..558494(+) (covR) [Streptococcus suis strain 2022WUSS148]
ATGGCTAAGAAAATTTTGATTGCAGGAAGGGAGCGCAATTTATCGCACTTTGTTTCCATGGAATTGCAGAAGAAAGAGTA
TTTGGTAGACTACGCTTCGACTGGGAAAGAGGCCCTACAACTGGCTCATGAAACAGATTTTGATTTAATATTAATGAGTT
TTCAGCTTTCGGATATGTCTAGCAAAGACTTGTCTAGGGAATTACTAGCTATAAAGCCTGCAAGTGTCATCATTGTTGCA
ATTGATTCTGCGGATGTTTCACAATATGGAGAAGAAGTACTTTCGTACGCTGTTTCTTATGTTGTAAAGCCCTTCGTTAT
TAGTGAATTGGTTGAGCAGATTTCTTCCATTTTTCGTGGAAGAGATTTCATTGATACTAATTGCAAACAAGTTCACCTAC
ACGCTGCCTACCGTGATTTGAAAATTGATTTTCAGAATCGAACAGTGACTCGTGGAGAAGAATTAATTAGCTTAACAAGG
CGAGAATATGATTTGCTTGCAACCCTAATGAATAGTCCAGAGCCTGTTAGTCGTGAGCAATTGCTGGAACGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTTGTTGATGTATATATTCGCTATTTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATTAAAACGGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)

Response regulator receiver domain (Response_reg)

(6-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.052

100

0.485
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.304

100

0.459