Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SO574_RS12295 Genome accession   NZ_CP140102
Coordinates   2709000..2709509 (-) Length   169 a.a.
NCBI ID   WP_322803224.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2704000..2714509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS12275 (SO574_12275) - 2704330..2705373 (-) 1044 Protein_2343 ATP-binding protein -
  SO574_RS12280 (SO574_12280) aroB 2705425..2706525 (-) 1101 WP_211915860.1 3-dehydroquinate synthase -
  SO574_RS12285 (SO574_12285) aroK 2706554..2707072 (-) 519 WP_099080818.1 shikimate kinase AroK -
  SO574_RS12290 (SO574_12290) pilQ 2707261..2708940 (-) 1680 WP_409202761.1 type IV pilus secretin PilQ Machinery gene
  SO574_RS12295 (SO574_12295) pilP 2709000..2709509 (-) 510 WP_322803224.1 pilus assembly protein PilP Machinery gene
  SO574_RS12300 (SO574_12300) pilO 2709499..2710092 (-) 594 WP_322803225.1 type 4a pilus biogenesis protein PilO Machinery gene
  SO574_RS12305 (SO574_12305) pilN 2710085..2710660 (-) 576 WP_322804187.1 PilN domain-containing protein Machinery gene
  SO574_RS12310 (SO574_12310) pilM 2710644..2711657 (-) 1014 WP_221068220.1 type IV pilus biogenesis protein PilM Machinery gene
  SO574_RS12315 (SO574_12315) - 2711799..2714363 (+) 2565 WP_322803226.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18685.75 Da        Isoelectric Point: 9.4830

>NTDB_id=912533 SO574_RS12295 WP_322803224.1 2709000..2709509(-) (pilP) [Vibrio alfacsensis strain VA-1]
MKNNVVVLVSVLLLGCQANDESLIDFIRDVETQARDDVIKLKPATAYQVVPYKASVRRTPFALPKEVLSVTQPMATLDCW
QPTSRASSEQLERFPLERLRLKGVIGMGAQMSGLIQVPSGKVYRVQTGEYIGQNNGFVASISSDHLLINETLPDGLGCWK
KRKVTLALK

Nucleotide


Download         Length: 510 bp        

>NTDB_id=912533 SO574_RS12295 WP_322803224.1 2709000..2709509(-) (pilP) [Vibrio alfacsensis strain VA-1]
ATGAAAAATAACGTAGTGGTGTTAGTCAGCGTGCTATTGCTCGGTTGTCAAGCTAACGATGAATCGTTAATTGACTTCAT
TCGTGATGTTGAAACCCAAGCTCGTGATGACGTTATTAAACTTAAGCCTGCCACAGCGTATCAAGTCGTACCCTATAAAG
CGTCAGTGCGCCGTACGCCTTTCGCTCTACCTAAAGAGGTGCTCTCGGTGACACAACCGATGGCAACGCTAGATTGTTGG
CAACCGACATCAAGAGCATCGTCGGAGCAATTGGAGCGCTTCCCATTAGAAAGATTGCGTTTAAAAGGTGTGATTGGGAT
GGGAGCACAAATGTCAGGGCTTATTCAAGTGCCGAGCGGTAAGGTATATCGAGTTCAGACTGGGGAATATATTGGTCAAA
ACAATGGTTTCGTCGCGTCTATCTCGAGTGATCATTTGTTAATAAATGAAACCTTGCCGGATGGATTGGGGTGCTGGAAA
AAGCGTAAGGTGACATTAGCGTTGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(23-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

60.234

100

0.609
  pilP Vibrio cholerae strain A1552

51.534

96.45

0.497