Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   SO574_RS10890 Genome accession   NZ_CP140102
Coordinates   2427192..2427806 (+) Length   204 a.a.
NCBI ID   WP_128810226.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2422192..2432806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS10870 (SO574_10870) - 2422509..2423426 (-) 918 WP_221069943.1 ABC transporter ATP-binding protein -
  SO574_RS10875 (SO574_10875) - 2423646..2425316 (-) 1671 WP_221068080.1 SulP family inorganic anion transporter -
  SO574_RS10880 (SO574_10880) can 2425591..2426259 (+) 669 WP_221068081.1 carbonate dehydratase -
  SO574_RS10885 (SO574_10885) hpt 2426338..2426868 (-) 531 WP_128810227.1 hypoxanthine phosphoribosyltransferase -
  SO574_RS10890 (SO574_10890) opaR 2427192..2427806 (+) 615 WP_128810226.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  SO574_RS10895 (SO574_10895) lpdA 2427984..2429414 (-) 1431 WP_211916006.1 dihydrolipoyl dehydrogenase -
  SO574_RS10900 (SO574_10900) aceF 2429673..2431598 (-) 1926 WP_322803093.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23551.67 Da        Isoelectric Point: 6.0733

>NTDB_id=912519 SO574_RS10890 WP_128810226.1 2427192..2427806(+) (opaR) [Vibrio alfacsensis strain VA-1]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQYSNFLS
DNIDLDLHARENISNITNAMLELVSQDCHWQKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFNGICYSLFVQANRTSNDSELATLTASYLNMLCIYKHEH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=912519 SO574_RS10890 WP_128810226.1 2427192..2427806(+) (opaR) [Vibrio alfacsensis strain VA-1]
ATGGATTCAATCGCGAAGAGACCTCGCACTAGGCTTTCCCCTTTAAAACGTAAACAGCAACTTATGGAAATTGCGTTAGA
AGTATTCGCACGTCGTGGCATCGGTCGCGGTGGCCATGCAGATATCGCAGACATCGCTCAAGTTTCAGTCGCAACAGTTT
TCAATTACTTCCCAACTCGCGAAGACTTAGTTGATGAAGTGTTAAATCATGTCGTTCGTCAATACTCTAACTTCTTATCT
GACAATATCGATTTAGACCTGCATGCTCGCGAAAATATCTCAAATATTACCAATGCGATGCTTGAATTAGTGAGCCAAGA
TTGTCATTGGCAGAAAGTATGGTTTGAATGGAGCGCATCGACGCGTGATGAGGTTTGGCCTCTATTTGTCTCTACAAATA
GAACGAACCAACTGTTAGTTCAAAACATGTTCATTAAAGCCATTGAGCGAGGTGAAGTCTGCGATCAGCATGAGCCAGAA
CACTTGGCAAACCTGTTCAATGGTATTTGTTACTCGTTGTTCGTCCAAGCCAATCGAACCAGTAATGATAGTGAACTAGC
GACGCTTACCGCCTCTTACCTAAATATGCTTTGTATTTATAAACATGAGCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

89.216

100

0.892
  hapR Vibrio cholerae C6706

72

98.039

0.706
  hapR Vibrio cholerae strain A1552

72

98.039

0.706