Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   L6411_RS04785 Genome accession   NZ_AP025333
Coordinates   986466..987692 (-) Length   408 a.a.
NCBI ID   WP_237374469.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-189     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 981466..992692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6411_RS04760 (GUT189_09020) - 981785..982003 (-) 219 WP_024532717.1 hypothetical protein -
  L6411_RS04765 (GUT189_09030) - 982073..983008 (-) 936 WP_237373665.1 excalibur calcium-binding domain-containing protein -
  L6411_RS04770 (GUT189_09040) - 983520..983702 (+) 183 WP_120171717.1 4-oxalocrotonate tautomerase -
  L6411_RS04775 (GUT189_09050) lepA 983776..985608 (-) 1833 WP_024532033.1 translation elongation factor 4 -
  L6411_RS04780 (GUT189_09060) yihA 985819..986406 (-) 588 WP_024532032.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  L6411_RS04785 (GUT189_09070) clpX 986466..987692 (-) 1227 WP_237374469.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  L6411_RS04790 (GUT189_09080) - 987892..988404 (-) 513 WP_155964149.1 dihydrofolate reductase -
  L6411_RS04795 (GUT189_09090) - 988816..989655 (-) 840 WP_024532029.1 thymidylate synthase -
  L6411_RS04800 (GUT189_09100) - 989707..989904 (-) 198 WP_120171719.1 hypothetical protein -
  L6411_RS04805 (GUT189_09110) - 990319..991278 (-) 960 WP_237374470.1 ROK family glucokinase -
  L6411_RS04810 (GUT189_09120) - 991481..991816 (-) 336 WP_024532025.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45410.93 Da        Isoelectric Point: 4.6108

>NTDB_id=91246 L6411_RS04785 WP_237374469.1 986466..987692(-) (clpX) [Streptococcus ruminantium strain GUT-189]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDDNDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDVQKFGIIPELIGRLPVFAALDQLTTEDLIRIL
TEPKNALVKQYQTLLSYDDVELEFDEDALEEIAKKAIERKTGARGLRSIIEETMLDVMFEVPGQDEIKRVRVTKAAVNGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=91246 L6411_RS04785 WP_237374469.1 986466..987692(-) (clpX) [Streptococcus ruminantium strain GUT-189]
ATGGCTGTTAAGCATACACATGAGCTTATTTACTGCTCATTTTGTGGAAAAAATCAAGAAGAAGTCAAAAAAATTATTGC
CGGAAACAATGTATTTATCTGTAATGAATGTGTCGAATTAGCACAAGAAATCATTCGTGAGGAATTGGCAGAAGAAGTTC
TAACAGACTTGGCTGATACGCCAAAACCACAGGAATTATTAAATATCCTAAACAACTATGTCATCGGACAAGACCGGGCG
AAACGTGCGCTGGCAGTGGCGGTTTATAACCACTATAAACGAATCAATTTTCAAGACAGTCGTGATGATAATGATGTTGA
TTTACAAAAATCAAATATCCTCATGATTGGACCAACTGGATCTGGTAAAACCTTCTTAGCACAGACTCTCGCTAAAAGTT
TGAATGTACCATTTGCGATTGCAGATGCCACAGCCTTGACAGAAGCAGGTTATGTTGGTGAGGATGTAGAAAATATCCTT
CTCAAACTCTTGCAGGCGGCAGATTTCAATATTGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAACGTGTCCATTACGCGGGATGTATCTGGTGAAGGTGTTCAGCAGGCTCTCCTAAAAATTATCG
AGGGGACAGTTGCTAGCGTACCACCACAGGGAGGACGTAAACATCCAAACCAAGAGATGATCCATGTAGACACCAAGAAC
ATCCTCTTCATCGTAGGTGGCGCTTTTGATGGTATTGAGGAAATTGTTAAACAACGTCTCGGCGAAAAAATTATTGGATT
TGGTCAGAATAATCGTGCCATTGATGAAAAAGAATCCTACATGCAACATATTATTGCTGATGATGTCCAAAAATTTGGTA
TCATTCCAGAATTGATTGGTCGGTTACCAGTTTTTGCAGCTCTGGATCAACTGACAACAGAGGATTTGATTCGCATTCTG
ACTGAACCTAAAAATGCTCTTGTTAAGCAATACCAAACGCTCCTTTCGTACGATGATGTGGAATTAGAATTTGACGAGGA
TGCCTTGGAGGAAATTGCTAAAAAAGCAATTGAGCGTAAAACAGGTGCTCGTGGTCTTCGCTCCATTATTGAGGAAACAA
TGCTGGATGTCATGTTTGAAGTGCCGGGTCAAGATGAGATTAAGCGTGTTCGAGTAACCAAAGCTGCAGTAAATGGCAAG
GAAAAGCCACTACTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

82.885

100

0.831
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.96

98.529

0.571

Multiple sequence alignment