Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   U0037_RS28905 Genome accession   NZ_CP140009
Coordinates   6307651..6308058 (-) Length   135 a.a.
NCBI ID   WP_003176671.1    Uniprot ID   C3K3J6
Organism   Pseudomonas marginalis strain SBW25     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6302651..6313058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0037_RS28890 (U0037_28890) - 6304654..6306705 (-) 2052 WP_015886334.1 methyl-accepting chemotaxis protein -
  U0037_RS28895 (U0037_28895) - 6306702..6307226 (-) 525 WP_015886335.1 chemotaxis protein CheW -
  U0037_RS28900 (U0037_28900) pilH 6307239..6307604 (-) 366 WP_014720320.1 twitching motility response regulator PilH -
  U0037_RS28905 (U0037_28905) pilG 6307651..6308058 (-) 408 WP_003176671.1 twitching motility response regulator PilG Regulator
  U0037_RS28910 (U0037_28910) gshB 6308298..6309251 (+) 954 WP_005792255.1 glutathione synthase -
  U0037_RS28915 (U0037_28915) - 6309329..6310234 (+) 906 WP_015886336.1 energy transducer TonB -
  U0037_RS28920 (U0037_28920) - 6310417..6310986 (+) 570 WP_015886337.1 YqgE/AlgH family protein -
  U0037_RS28925 (U0037_28925) ruvX 6310986..6311423 (+) 438 WP_003176676.1 Holliday junction resolvase RuvX -
  U0037_RS28930 (U0037_28930) pyrR 6311497..6312003 (+) 507 WP_015886338.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  U0037_RS28935 (U0037_28935) - 6312028..6313032 (+) 1005 WP_015886339.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14936.43 Da        Isoelectric Point: 7.3842

>NTDB_id=912440 U0037_RS28905 WP_003176671.1 6307651..6308058(-) (pilG) [Pseudomonas marginalis strain SBW25]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLSAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=912440 U0037_RS28905 WP_003176671.1 6307651..6308058(-) (pilG) [Pseudomonas marginalis strain SBW25]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGACTCAAAGACGATCCGCCGTACCGCTGAAACCTTGTT
GAAGAACGTGGGGTGCGATGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGGATTGTCGATCATCACCCGCACA
TCATCTTTGTCGACATCATGATGCCGCGCCTGGATGGTTATCAGACCTGCGCCCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGCGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGAGTGCGATCAAGGCCTACGTGCCCGGCTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C3K3J6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.4

92.593

0.652
  vicR Streptococcus mutans UA159

38.889

93.333

0.363