Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   U0037_RS18845 Genome accession   NZ_CP140009
Coordinates   4168352..4168987 (-) Length   211 a.a.
NCBI ID   WP_012724911.1    Uniprot ID   A0A855QI08
Organism   Pseudomonas marginalis strain SBW25     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4163352..4173987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0037_RS18810 (U0037_18810) - 4163718..4164389 (+) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -
  U0037_RS18815 (U0037_18815) murB 4164466..4165485 (-) 1020 WP_012724906.1 UDP-N-acetylmuramate dehydrogenase -
  U0037_RS18820 (U0037_18820) - 4165482..4165946 (-) 465 WP_012724907.1 low molecular weight protein-tyrosine-phosphatase -
  U0037_RS18825 (U0037_18825) kdsB 4165946..4166710 (-) 765 WP_012724908.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U0037_RS18830 (U0037_18830) - 4166707..4166892 (-) 186 WP_003174668.1 Trm112 family protein -
  U0037_RS18835 (U0037_18835) lpxK 4166917..4167927 (-) 1011 WP_012724909.1 tetraacyldisaccharide 4'-kinase -
  U0037_RS18840 (U0037_18840) - 4167927..4168355 (-) 429 WP_012724910.1 ExbD/TolR family protein -
  U0037_RS18845 (U0037_18845) exbB 4168352..4168987 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U0037_RS18850 (U0037_18850) comA 4169071..4171296 (-) 2226 WP_012724912.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U0037_RS18855 (U0037_18855) - 4171432..4171947 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  U0037_RS18860 (U0037_18860) - 4171964..4172148 (-) 185 Protein_3755 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22875.02 Da        Isoelectric Point: 7.3613

>NTDB_id=912430 U0037_RS18845 WP_012724911.1 4168352..4168987(-) (exbB) [Pseudomonas marginalis strain SBW25]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=912430 U0037_RS18845 WP_012724911.1 4168352..4168987(-) (exbB) [Pseudomonas marginalis strain SBW25]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTTACCCCCGAGCATCTGCTGGGGCAGGTCTGGTCCTGGATCAAGAACA
AGCAGCTGGACAAGGACAAACTCAAGGAACTGCGCGCCAATTCGCCGTTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGCGTCATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCATTGCTCGGTTTGCTGGGTACGGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCCGTGCTGGCCGGTGGTATTTCCAAGGCGCTGATCACCACGGCA
GCAGGCCTGATGGTGGGTATTCCTTCGGTATTCTTCCACCGTTTCCTGCAACGTCGCATTGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGATCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855QI08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848