Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   U0040_RS11815 Genome accession   NZ_CP140003
Coordinates   2396396..2396779 (-) Length   127 a.a.
NCBI ID   WP_004694493.1    Uniprot ID   A0A7H8SES6
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2394572..2395453 2396396..2396779 flank 943


Gene organization within MGE regions


Location: 2394572..2396779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS11800 (U0040_11800) - 2394572..2395453 (+) 882 WP_019767920.1 IS982 family transposase -
  U0040_RS11805 (U0040_11805) - 2395424..2395991 (-) 568 Protein_2286 chemotaxis protein CheW -
  U0040_RS11810 (U0040_11810) - 2395997..2396365 (-) 369 WP_004694491.1 response regulator -
  U0040_RS11815 (U0040_11815) pilG 2396396..2396779 (-) 384 WP_004694493.1 twitching motility response regulator PilG Regulator

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14184.23 Da        Isoelectric Point: 4.8722

>NTDB_id=912353 U0040_RS11815 WP_004694493.1 2396396..2396779(-) (pilG) [Acinetobacter johnsonii strain HAMBI_0097]
MDDKFQNLKVMVIDDSKTIRRTAETLLQREGCEVVTAVDGFDALSKIAQANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVVMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=912353 U0040_RS11815 WP_004694493.1 2396396..2396779(-) (pilG) [Acinetobacter johnsonii strain HAMBI_0097]
ATGGACGATAAATTCCAGAATCTAAAAGTAATGGTCATTGATGATTCAAAAACCATTCGTCGCACAGCTGAAACATTATT
GCAACGTGAAGGTTGTGAAGTGGTGACTGCAGTCGATGGTTTTGACGCATTGTCAAAAATTGCTCAAGCCAATCCTGATA
TCGTATTTGTCGACATTATGATGCCACGACTAGATGGTTATCAAACGTGTGCATTAATCAAAAATTCACAAAATTATCAA
AATATTCCTGTCGTAATGCTCTCTAGCAAAGATGGTCTATTTGACCAAGCCAAAGGGCGTGTTGTCGGTTCAGATGAATA
TTTAACAAAGCCGTTTAGTAAAGATGAATTATTAAATGCGATTCGTAATCACGTTTCAGCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SES6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

94.488

100

0.945
  vicR Streptococcus mutans UA159

39.316

92.126

0.362