Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   U0040_RS09300 Genome accession   NZ_CP140003
Coordinates   1889747..1890097 (-) Length   116 a.a.
NCBI ID   WP_406935391.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1884747..1895097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS09275 (U0040_09275) - 1885827..1886630 (-) 804 Protein_1800 enoyl-CoA hydratase/isomerase family protein -
  U0040_RS09280 (U0040_09280) ung 1886627..1887340 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  U0040_RS09285 (U0040_09285) - 1887382..1887978 (-) 597 WP_004696854.1 6-pyruvoyl trahydropterin synthase family protein -
  U0040_RS09290 (U0040_09290) gspK 1888101..1889051 (-) 951 WP_114836890.1 type II secretion system minor pseudopilin GspK -
  U0040_RS09295 (U0040_09295) xcpW 1889130..1889750 (-) 621 WP_114836891.1 type II secretion system minor pseudopilin GspJ Machinery gene
  U0040_RS09300 (U0040_09300) xcpV 1889747..1890097 (-) 351 WP_406935391.1 type II secretion system protein Machinery gene
  U0040_RS09305 (U0040_09305) - 1890225..1890794 (-) 570 WP_078388685.1 type II secretion system protein -
  U0040_RS09310 (U0040_09310) - 1890807..1891421 (-) 615 WP_114836892.1 TetR/AcrR family transcriptional regulator -
  U0040_RS09315 (U0040_09315) - 1891467..1892240 (-) 774 WP_078425022.1 TatD family hydrolase -
  U0040_RS09320 (U0040_09320) - 1892267..1892608 (-) 342 WP_114836893.1 PilZ domain-containing protein -
  U0040_RS09325 (U0040_09325) - 1892623..1893606 (-) 984 WP_078425020.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  U0040_RS09330 (U0040_09330) kdsB 1893626..1894387 (-) 762 WP_114836894.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12641.35 Da        Isoelectric Point: 8.6812

>NTDB_id=912350 U0040_RS09300 WP_406935391.1 1889747..1890097(-) (xcpV) [Acinetobacter johnsonii strain HAMBI_0097]
MVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQGETWQIDKSAQATISTN
VQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDGSQP

Nucleotide


Download         Length: 351 bp        

>NTDB_id=912350 U0040_RS09300 WP_406935391.1 1889747..1890097(-) (xcpV) [Acinetobacter johnsonii strain HAMBI_0097]
ATGGTGGCGCTGGCTATTTTTGCTACGGCAGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCA
TGCCATCTTGCGTACCAAGGCACAATTTGTTGCCTTGAATGAAATTTCGATGATGGAAATCAATCGTGATTGGCTACAAG
GCACGGCCTCTAAACAAATCACCCAACAAGGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATTAGTACTAAT
GTGCAACGCGTCAATGTACAGGTGAGCTTGGTGAATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTT
TTTTAACCATCGTGATGGAAGCCAACCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

73.636

94.828

0.698