Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   U0040_RS01925 Genome accession   NZ_CP140003
Coordinates   415354..416001 (-) Length   215 a.a.
NCBI ID   WP_078426689.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410354..421001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS01890 (U0040_01890) mlaE 410696..411475 (+) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  U0040_RS01895 (U0040_01895) - 411475..412149 (+) 675 WP_004691366.1 outer membrane lipid asymmetry maintenance protein MlaD -
  U0040_RS01900 (U0040_01900) - 412170..412805 (+) 636 WP_087527364.1 phospholipid-binding protein MlaC -
  U0040_RS01905 (U0040_01905) - 412817..413104 (+) 288 WP_004691363.1 lipid asymmetry maintenance protein MlaB -
  U0040_RS01910 (U0040_01910) - 413187..414200 (-) 1014 WP_004691361.1 CorA family divalent cation transporter -
  U0040_RS01915 (U0040_01915) - 414353..414952 (+) 600 WP_004977937.1 TIGR00730 family Rossman fold protein -
  U0040_RS01920 (U0040_01920) - 414949..415353 (+) 405 WP_114836552.1 NUDIX hydrolase -
  U0040_RS01925 (U0040_01925) comF 415354..416001 (-) 648 WP_078426689.1 ComF family protein Machinery gene
  U0040_RS01930 (U0040_01930) recG 415988..418033 (-) 2046 WP_114836551.1 ATP-dependent DNA helicase RecG -
  U0040_RS01935 (U0040_01935) - 418067..418882 (+) 816 WP_114836550.1 NAD-dependent epimerase/dehydratase family protein -
  U0040_RS01940 (U0040_01940) - 419063..419770 (-) 708 WP_114836549.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24881.03 Da        Isoelectric Point: 8.8030

>NTDB_id=912339 U0040_RS01925 WP_078426689.1 415354..416001(-) (comF) [Acinetobacter johnsonii strain HAMBI_0097]
MPMFSHLLHTAKQLLHRAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGHYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRFPKVQAIVPMPISSQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDHIQQQ
FKIDPQQRQYAKCYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=912339 U0040_RS01925 WP_078426689.1 415354..416001(-) (comF) [Acinetobacter johnsonii strain HAMBI_0097]
ATGCCTATGTTTAGTCATCTGCTACATACTGCCAAACAGTTGCTACACAGAGCACAGCCCTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTACATTCGGTCTGTTTGGATTGCTGGCAACAACTCCCACTGCATCCACAGACCATTGAAAAACAAGAGC
TGAGTATTCATGTGGCGGGACATTATCAATATCCTTTAGATCATCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCTGGCATTCTTCAGCAAATTCGCTTCCCTAAAGTGCAAGCAATTGTTCCAATGCCGATTTCGAG
CCAGCGTTTAGCCGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGCTAAATGTTCCCATTT
GGCAACCTGTGATTCGGCTACATCAACATTCGCAAAAAGGACTCAGTCGACTAGAACGCTTAGATCACATTCAGCAGCAA
TTTAAAATTGATCCACAGCAACGCCAATATGCAAAATGTTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCCCTGACTTTACAACTTGAACAATTAGGTTGTCATAAAGTCAGCGCCGCATGTATTGCCTATGCAC
TAGAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

56.398

98.14

0.553
  comF Acinetobacter baumannii strain A118

59.278

90.233

0.535