Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   U0040_RS01635 Genome accession   NZ_CP140003
Coordinates   356185..360132 (+) Length   1315 a.a.
NCBI ID   WP_213069314.1    Uniprot ID   A0AAV3WCA2
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351185..365132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS01605 (U0040_01605) gmk 351464..352087 (-) 624 WP_114836319.1 guanylate kinase -
  U0040_RS01610 (U0040_01610) ispH 352222..353172 (+) 951 WP_114836318.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U0040_RS01615 (U0040_01615) - 353338..353889 (+) 552 WP_114836317.1 Tfp pilus assembly protein FimT/FimU -
  U0040_RS01620 (U0040_01620) pilV 353889..354407 (+) 519 WP_114836316.1 type IV pilus modification protein PilV Machinery gene
  U0040_RS01625 (U0040_01625) - 354407..355366 (+) 960 WP_114836315.1 PilW family protein -
  U0040_RS01630 (U0040_01630) - 355359..356165 (+) 807 WP_114836314.1 PilX N-terminal domain-containing pilus assembly protein -
  U0040_RS01635 (U0040_01635) pilY1 356185..360132 (+) 3948 WP_213069314.1 PilC/PilY family type IV pilus protein Machinery gene
  U0040_RS17380 - 360142..360244 (+) 103 Protein_317 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  U0040_RS01640 (U0040_01640) - 360217..360675 (+) 459 WP_412095945.1 type IV pilin protein -
  U0040_RS01645 (U0040_01645) - 360669..361127 (+) 459 WP_114836312.1 type IV pilin protein -
  U0040_RS01650 (U0040_01650) rpsP 361273..361530 (+) 258 WP_004718284.1 30S ribosomal protein S16 -
  U0040_RS01655 (U0040_01655) rimM 361559..362107 (+) 549 WP_004978035.1 ribosome maturation factor RimM -
  U0040_RS01660 (U0040_01660) trmD 362136..362876 (+) 741 WP_114836311.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  U0040_RS01665 (U0040_01665) rplS 363017..363391 (+) 375 WP_004691454.1 50S ribosomal protein L19 -
  U0040_RS01670 (U0040_01670) - 363451..364404 (-) 954 WP_114836310.1 esterase/lipase family protein -

Sequence

Protein


Download         Length: 1315 a.a.        Molecular weight: 141797.39 Da        Isoelectric Point: 6.5123

>NTDB_id=912338 U0040_RS01635 WP_213069314.1 356185..360132(+) (pilY1) [Acinetobacter johnsonii strain HAMBI_0097]
MQLKKIQMTILSASLTALMCSSVTQASDLQIYAMPTAGQKTIVMMVDVSGSMDWGMSGQNSTVTSLNPKRIEALKDGLRA
VLNSNDPKLENVVIGLGKYPGDGNSYSTDAQYMRGKILVEAKKLGPSTKTEGVFDSQQRRDMLAAVNAISVVGGTPTAHG
YTEAASYLMGTRTDNYNIEKDIVVYNQNLARTYASGYGYRYYKCDKYLTNIDTSDSYNYYGCDKWTEISGSDFDKIGSDF
NEVYNNVRYYYKKNGTIKQTVSTNSSSYSGMVNSVGKITTDGVQHYNSPLPAIDKRVTCDGQGVYLLSDGVPNSSSDANA
EKQMINAMANPLLNTSVPNFSCNVNSGNLSNPLTDGDPGGAWKCMGEFAKRLYSGVNPAGVKIQTAFVGYSGSFNSLSSD
DVKNACRLGSNPKGDVCSHYQADGLTKNTASYANHVEGYGNGGFYTANSANDVTTSVLNFIDNLGTDPLEPLPTGSLSVP
VDSLNPNGLQNLGYLRMLEPNPAQPSLLTWAGNLKKYTMQDGVLVDGTNNVFDATGNFNTKTKNLWGARTVNDGGKVNVG
GTYEMLPMPTTTKTTALRNVMTDVTSVTGTTLNPLLTNNNGTYQSQPLLKIVKTTKTSSKEEVLNAFRNQATLKDFPIST
RLKLLNYLGFKVDTSLGDIPVNNDVSYEGSPYVSMGGIIHSFPVQMTYSGRITATGELATDDITLPDGTILKPRNQSVLY
GSMEGGLHIVDAATGVEQMVFVPAEILNNTVASNALVKSGSGTPAPAHGVDAPWIVDSTYRTTGTYPNSQVNAIKMNVYG
GLRMGGNSFYGLDVLNPTEPKLKFRVGSDQADYTRMGQSWSKPVLIDIRYQGVPTRALVVGGGYDACYENPRFKLGTANP
SEYQIKDSAGNVVDSCNKTEAKGNAVYVIDAETGKRLFWVSNTGSNANNADLKHSVVSRISTLDRDGDGYVDHLYFGDLG
GQVFRVDMDNYQTKSLTTTGNTTTTSYSNFGVRTVRLANLATTDTGTAITNGDNPRFYEPVTLTIHDEDSKTFIHVGAAS
GDRSTPLDVAPIKGREGLSPYVALTNRPTNRVYGVFDLDFMKEDLITNTALTGNYTSTTTETAVPTKNRLITRNLTLADL
LGNPQTSITGNETIYSKFFSTTAPKHGWYRSLSWSWDYQVEGTGRELANNTFRQSGGLKAFEEPIAIGNNLFVPVYDPEG
TGVTPQNPCLPRVIGETDRQQYCLPFGVCVTAAGIINVAQEGGSGFRVKKVGDEYKNTNVIGKGIQGIALANNGGGGGGS
GSNSCGNYTLATLNDGVGNWQCTRVLNPTRWFEKR

Nucleotide


Download         Length: 3948 bp        

>NTDB_id=912338 U0040_RS01635 WP_213069314.1 356185..360132(+) (pilY1) [Acinetobacter johnsonii strain HAMBI_0097]
ATGCAACTCAAAAAAATCCAAATGACTATACTGAGTGCTTCTTTGACAGCACTGATGTGTAGTAGTGTCACTCAAGCAAG
TGACTTACAGATTTATGCTATGCCTACAGCAGGTCAAAAGACCATTGTTATGATGGTGGATGTTTCAGGTAGTATGGATT
GGGGGATGTCAGGCCAAAATTCAACTGTTACTTCTTTGAATCCGAAAAGAATTGAAGCTCTAAAAGATGGGTTGAGGGCA
GTTTTAAATAGTAATGATCCGAAATTAGAAAATGTAGTGATTGGTTTGGGTAAATATCCTGGCGATGGTAATAGTTATAG
CACAGACGCCCAATATATGAGGGGTAAAATTTTAGTGGAGGCGAAGAAGTTAGGTCCCTCAACTAAGACAGAAGGGGTGT
TTGACTCTCAACAGCGACGCGATATGCTGGCAGCTGTTAATGCTATATCTGTTGTTGGGGGAACGCCAACGGCACATGGT
TATACTGAAGCGGCTTCATATTTGATGGGAACGCGAACTGATAATTATAATATAGAGAAAGATATAGTTGTTTATAATCA
AAATCTTGCAAGAACCTATGCGTCGGGTTATGGTTATAGATATTATAAATGTGATAAATACTTAACAAATATCGATACCT
CTGATAGTTATAACTACTATGGTTGTGATAAGTGGACAGAAATTAGCGGTAGTGATTTTGATAAAATAGGCTCTGATTTT
AATGAGGTCTATAATAATGTTCGCTACTATTACAAAAAAAATGGAACAATTAAACAAACAGTTTCTACCAACTCTTCATC
ATATTCTGGGATGGTGAATTCCGTTGGAAAAATAACGACTGATGGTGTGCAGCACTATAATTCGCCTCTGCCTGCCATAG
ATAAGCGTGTTACGTGTGATGGACAAGGTGTTTATCTTTTATCTGATGGTGTCCCTAATTCATCATCAGATGCAAATGCT
GAAAAACAAATGATCAATGCCATGGCAAACCCACTCCTAAATACAAGTGTTCCAAATTTCTCTTGTAATGTGAATTCTGG
GAATCTTTCTAACCCATTAACAGATGGTGATCCTGGTGGTGCATGGAAGTGTATGGGAGAGTTTGCTAAACGGTTATATT
CTGGGGTGAATCCAGCTGGTGTAAAAATCCAAACAGCTTTTGTGGGTTATAGTGGTAGCTTTAATAGCTTAAGTAGTGAT
GATGTAAAGAATGCTTGCCGATTAGGGTCTAACCCGAAAGGAGATGTGTGCTCGCACTATCAGGCAGATGGTTTAACTAA
AAATACGGCCTCATATGCAAACCATGTAGAAGGCTACGGCAATGGTGGATTTTATACAGCAAACTCTGCCAATGATGTCA
CGACAAGTGTACTTAACTTTATTGATAACTTAGGTACAGATCCTCTTGAACCGTTACCTACGGGTTCCTTATCTGTGCCT
GTGGATTCTTTGAATCCAAATGGTTTGCAGAATCTGGGTTATTTACGGATGTTAGAACCGAATCCTGCACAGCCGAGTTT
ACTTACTTGGGCTGGGAATTTAAAAAAATACACAATGCAAGATGGTGTGCTGGTTGATGGTACCAATAATGTTTTTGACG
CGACTGGGAACTTTAATACCAAGACTAAAAACTTATGGGGAGCTCGTACTGTTAATGATGGTGGAAAAGTAAATGTGGGT
GGAACGTATGAAATGCTTCCGATGCCAACCACAACAAAAACGACAGCATTAAGAAATGTAATGACAGATGTTACAAGTGT
TACAGGAACGACACTGAATCCTCTGTTAACAAACAATAATGGAACCTATCAATCTCAGCCACTTCTAAAGATTGTTAAAA
CTACAAAAACAAGTTCAAAAGAAGAAGTTTTAAATGCGTTTAGAAATCAAGCGACGCTTAAAGATTTTCCAATTTCAACG
AGATTAAAGCTTCTAAATTATTTAGGTTTTAAAGTTGATACAAGTTTGGGGGACATTCCTGTAAATAATGATGTTAGTTA
TGAAGGATCCCCTTATGTGTCTATGGGGGGAATCATTCATTCATTCCCTGTTCAAATGACTTATTCTGGACGAATCACTG
CAACAGGTGAGCTTGCAACAGATGATATTACTCTACCAGATGGAACAATTTTAAAGCCACGTAATCAGTCCGTCTTGTAT
GGTTCGATGGAGGGGGGCTTACATATTGTAGATGCTGCAACGGGCGTCGAACAAATGGTTTTTGTTCCAGCGGAAATTCT
AAATAATACTGTTGCGTCTAATGCGTTAGTTAAAAGTGGCTCGGGAACACCCGCACCTGCGCATGGTGTTGATGCTCCGT
GGATTGTGGACTCAACTTATCGCACGACAGGAACGTACCCAAACTCTCAAGTAAATGCTATCAAAATGAATGTTTATGGC
GGTTTACGTATGGGGGGAAACAGTTTTTATGGTTTAGATGTATTAAATCCTACAGAGCCCAAGCTTAAATTCAGAGTGGG
GTCGGATCAAGCAGACTATACAAGAATGGGGCAGTCATGGTCTAAGCCTGTGTTAATTGATATTCGTTATCAAGGTGTAC
CGACACGAGCTCTAGTTGTAGGTGGTGGCTATGATGCTTGTTATGAGAACCCACGGTTTAAATTAGGTACTGCAAACCCT
TCAGAATATCAAATAAAAGATTCTGCTGGAAATGTAGTAGATTCTTGCAATAAAACAGAAGCTAAAGGTAATGCTGTATA
TGTGATTGATGCTGAAACTGGTAAGCGTTTGTTTTGGGTGAGTAATACAGGTTCTAATGCAAATAATGCCGATTTAAAAC
ACAGCGTAGTTTCACGTATTAGTACTTTAGACCGAGATGGTGATGGTTATGTCGATCACTTGTACTTTGGCGACTTAGGT
GGGCAAGTTTTCCGTGTCGATATGGATAACTATCAAACAAAAAGTTTAACAACGACTGGCAATACAACGACAACATCATA
TTCAAACTTTGGTGTGCGTACAGTTCGGTTGGCAAATTTGGCGACAACTGACACGGGTACTGCAATTACAAATGGTGATA
ATCCTCGTTTTTATGAACCAGTAACTTTAACTATTCATGATGAGGATAGTAAAACATTTATTCATGTTGGGGCCGCTTCT
GGGGACCGCAGCACACCACTAGATGTTGCTCCTATAAAAGGGCGTGAGGGTTTAAGTCCGTATGTTGCTTTAACAAATCG
TCCAACCAATAGAGTTTACGGTGTGTTCGATCTAGATTTTATGAAAGAGGATTTAATTACCAATACAGCATTGACTGGAA
ATTATACTAGTACAACTACAGAAACTGCTGTACCAACAAAAAATCGCTTGATTACACGTAACTTAACCTTGGCTGATTTA
TTAGGTAATCCACAAACAAGTATTACTGGAAATGAAACCATTTATAGTAAATTCTTTAGCACAACAGCGCCAAAACATGG
TTGGTATCGTTCGCTTTCATGGAGTTGGGATTATCAAGTTGAAGGAACGGGACGAGAGTTAGCAAATAACACATTTAGAC
AGTCGGGTGGTTTAAAGGCATTTGAAGAGCCTATTGCGATTGGTAATAATCTATTCGTTCCTGTGTATGATCCCGAAGGG
ACAGGTGTCACGCCTCAGAATCCTTGTTTACCACGTGTAATTGGTGAAACCGATCGACAGCAGTATTGTTTGCCATTTGG
AGTTTGTGTGACCGCTGCAGGCATCATTAATGTGGCTCAAGAGGGAGGATCTGGATTTAGGGTAAAAAAAGTAGGAGATG
AATATAAAAATACCAATGTAATTGGTAAAGGTATCCAAGGTATAGCCCTTGCCAATAATGGTGGCGGTGGCGGTGGCAGT
GGTTCAAATAGTTGTGGTAATTATACTTTAGCTACATTGAATGATGGTGTGGGTAATTGGCAGTGTACCCGTGTGTTGAA
TCCAACGCGTTGGTTTGAGAAAAGGTAG

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(711-968)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

46.564

100

0.484