Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   U0040_RS01620 Genome accession   NZ_CP140003
Coordinates   353889..354407 (+) Length   172 a.a.
NCBI ID   WP_114836316.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348889..359407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS01600 (U0040_01600) rpoZ 351105..351386 (-) 282 WP_004978050.1 DNA-directed RNA polymerase subunit omega -
  U0040_RS01605 (U0040_01605) gmk 351464..352087 (-) 624 WP_114836319.1 guanylate kinase -
  U0040_RS01610 (U0040_01610) ispH 352222..353172 (+) 951 WP_114836318.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U0040_RS01615 (U0040_01615) - 353338..353889 (+) 552 WP_114836317.1 Tfp pilus assembly protein FimT/FimU -
  U0040_RS01620 (U0040_01620) pilV 353889..354407 (+) 519 WP_114836316.1 type IV pilus modification protein PilV Machinery gene
  U0040_RS01625 (U0040_01625) - 354407..355366 (+) 960 WP_114836315.1 PilW family protein -
  U0040_RS01630 (U0040_01630) - 355359..356165 (+) 807 WP_114836314.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18168.80 Da        Isoelectric Point: 6.8575

>NTDB_id=912337 U0040_RS01620 WP_114836316.1 353889..354407(+) (pilV) [Acinetobacter johnsonii strain HAMBI_0097]
MKNYNQQGIGLMEVLVALLLLSIGVLGYTALQVRAVEASTEAAQRSHAIFVLKGLAESIRANNTGRASYMALVNQAIPNT
ISTACINPTTAGCDAAALATNDVQQAQANARNFGMRLRMENCPGTAGVAVADRRNCLFAGWGETDISQNTTQCMSAAGVY
VVGSNCLMMEVY

Nucleotide


Download         Length: 519 bp        

>NTDB_id=912337 U0040_RS01620 WP_114836316.1 353889..354407(+) (pilV) [Acinetobacter johnsonii strain HAMBI_0097]
ATGAAAAATTATAATCAACAAGGCATTGGACTTATGGAAGTTCTAGTGGCTTTGCTATTACTGTCGATAGGTGTGTTGGG
ATATACAGCACTGCAAGTCAGAGCTGTTGAAGCCTCTACAGAAGCAGCACAGAGATCTCACGCAATATTTGTATTAAAAG
GTTTAGCAGAAAGTATTAGGGCTAATAATACGGGCAGAGCTTCGTATATGGCTTTGGTGAATCAAGCTATACCAAACACG
ATTTCTACAGCATGTATAAATCCAACAACTGCGGGATGTGATGCCGCGGCATTAGCGACAAATGATGTGCAGCAAGCTCA
AGCAAATGCACGTAATTTTGGTATGCGTTTACGAATGGAAAATTGCCCAGGAACTGCAGGTGTTGCAGTGGCAGATCGTA
GAAACTGCCTTTTTGCGGGATGGGGGGAGACTGACATCAGTCAAAATACGACTCAGTGTATGAGTGCGGCTGGTGTTTAT
GTGGTTGGATCTAATTGTTTGATGATGGAGGTTTATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

46.277

100

0.506