Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   U0040_RS01495 Genome accession   NZ_CP140003
Coordinates   327847..328503 (+) Length   218 a.a.
NCBI ID   WP_004978083.1    Uniprot ID   N9BKL0
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 322847..333503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS01480 (U0040_01480) - 323257..324063 (+) 807 WP_114836330.1 putative RNA methyltransferase -
  U0040_RS01485 (U0040_01485) ponA 324095..326623 (-) 2529 WP_114836329.1 penicillin-binding protein PBP1a -
  U0040_RS01490 (U0040_01490) - 326789..327847 (+) 1059 Protein_287 pilus assembly protein PilM -
  U0040_RS01495 (U0040_01495) comN 327847..328503 (+) 657 WP_004978083.1 PilN domain-containing protein Machinery gene
  U0040_RS01500 (U0040_01500) pilO 328500..329237 (+) 738 WP_004978082.1 type 4a pilus biogenesis protein PilO Machinery gene
  U0040_RS01505 (U0040_01505) pilP 329237..329764 (+) 528 WP_004978081.1 pilus assembly protein PilP Machinery gene
  U0040_RS01510 (U0040_01510) pilQ 329784..331862 (+) 2079 WP_114836328.1 type IV pilus secretin PilQ Machinery gene
  U0040_RS01515 (U0040_01515) aroK 331900..332433 (+) 534 WP_005401350.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24242.65 Da        Isoelectric Point: 5.1439

>NTDB_id=912333 U0040_RS01495 WP_004978083.1 327847..328503(+) (comN) [Acinetobacter johnsonii strain HAMBI_0097]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVSPDATTPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=912333 U0040_RS01495 WP_004978083.1 327847..328503(+) (comN) [Acinetobacter johnsonii strain HAMBI_0097]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCTTGGTTCTTTTACAGTCAAAAACTGGAAGATCAAGAACAAGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTCCAATTAAAGTCATTGGAAGGTCTGCAAGAGCAGCGCAATGCG
ATTGTTGAACGGATGAAGTTGATCCAAGGTTTGCAAGGTCAACGTCCTGTGGCTGTTCGTTTGGTCGATGAAATGGTACG
TGTTACACCAAGTAATATGTACATTACTAAGTTTGTGCGTACGGGTGATAAATTTACCATTGAAGGGAAAGCGGAAAGCC
CGAATACAGTTGCGGAATTCTTACGTAACCTAGAAGCATCGGCGTGGTATCGCAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATCGTGCCACGTGTTGAAGAAACCTATGGCACCTTTGTGGTCACCGC
AGATTTAGATGAGATTGCTCAGCCAGTATCGCCTGATGCGACGACACCTGAAGCCGCAAGTACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9BKL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

71.707

94.037

0.674
  pilN Acinetobacter baumannii D1279779

69.856

95.872

0.67