Detailed information NTG0912188

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: U0004_RS05755
• Genome accession: NZ_CP139976
• Coordinates: 1267440..1268309 (-)
• Length: 289 a.a.
• NCBI ID: WP_070258879.1
• Uniprot ID: -
• Organism: Janthinobacterium lividum strain HAMBI_1919
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1262440..1273309

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0004_RS05715 (U0004_05715)	argJ	1262443..1263681 (+)	1239	WP_070258936.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
U0004_RS05720 (U0004_05720)	-	1263678..1264559 (+)	882	WP_070258870.1	ATP-binding protein	-
U0004_RS05725 (U0004_05725)	-	1264556..1264978 (+)	423	WP_070258873.1	NUDIX domain-containing protein	-
U0004_RS05730 (U0004_05730)	-	1265099..1265308 (+)	210	WP_070258875.1	FitA-like ribbon-helix-helix domain-containing protein	-
U0004_RS05735 (U0004_05735)	-	1265312..1265728 (+)	417	WP_070258877.1	hypothetical protein	-
U0004_RS05740 (U0004_05740)	yacG	1265732..1265923 (-)	192	WP_034785391.1	DNA gyrase inhibitor YacG	-
U0004_RS05745 (U0004_05745)	zapD	1265942..1266697 (-)	756	WP_034748811.1	cell division protein ZapD	-
U0004_RS05750 (U0004_05750)	coaE	1266760..1267407 (-)	648	WP_034784995.1	dephospho-CoA kinase	-
U0004_RS05755 (U0004_05755)	pilD	1267440..1268309 (-)	870	WP_070258879.1	prepilin peptidase	Machinery gene
U0004_RS05760 (U0004_05760)	-	1268451..1269611 (-)	1161	WP_070258881.1	acyltransferase family protein	-
U0004_RS05765 (U0004_05765)	-	1269743..1270939 (-)	1197	WP_070258883.1	type II secretion system F family protein	-
U0004_RS05770 (U0004_05770)	-	1271013..1272485 (-)	1473	WP_230523170.1	DHA2 family efflux MFS transporter permease subunit	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 30945.76 Da
• Isoelectric Point: 7.3209

>NTDB_id=912188 U0004_RS05755 WP_070258879.1 1267440..1268309(-) (pilD) [Janthinobacterium lividum strain HAMBI_1919]
MPPDTLLFAAPGNLPVALVAALFGLIVGSFLNVVIHRVPKMMQRESDNYVAEESGLPLPHTDRYNLMLPHSNCTACGHRI
TAMENIPVISYLLLRGKCSACQAPISVRYPLVELLTGALSALLVWHFGSGWTGLATLVFAWLLIAMTFIDADTQMLPDDL
TFPLLWAGLLVNINGTFVPLQDAVIGAAAGYLALWGVYWAFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSLV
GAVVGIGLIVFARRGRDKPIPFGPYLAAAGLIALLYGTPLSRLTLGLIG

Nucleotide

• Length: 870 bp

>NTDB_id=912188 U0004_RS05755 WP_070258879.1 1267440..1268309(-) (pilD) [Janthinobacterium lividum strain HAMBI_1919]
ATGCCTCCAGATACCCTGCTGTTCGCCGCGCCCGGCAACCTGCCCGTCGCCCTCGTCGCCGCCCTGTTCGGCCTGATCGT
CGGCAGCTTCCTCAACGTGGTGATCCACCGCGTGCCGAAAATGATGCAGCGCGAATCCGATAATTACGTGGCGGAAGAAA
GCGGCTTGCCCTTGCCGCACACGGACCGCTACAACCTGATGCTGCCGCACTCGAACTGCACCGCTTGCGGCCACCGCATC
ACGGCCATGGAAAACATCCCCGTCATCAGTTACCTGCTGCTGCGCGGCAAATGCAGCGCCTGCCAGGCACCGATCTCCGT
GCGCTATCCGCTGGTCGAACTGCTGACGGGCGCCCTGTCGGCCCTTCTGGTCTGGCACTTCGGCAGCGGCTGGACGGGTC
TCGCCACCCTCGTGTTTGCCTGGCTGCTGATCGCCATGACCTTCATCGACGCCGATACGCAAATGCTGCCCGACGATCTC
ACCTTTCCCCTGCTGTGGGCGGGCCTGCTGGTCAATATCAATGGCACCTTCGTGCCCCTGCAAGACGCCGTCATCGGCGC
GGCCGCCGGCTACCTGGCCCTGTGGGGCGTGTACTGGGCCTTCAAGCTGGCGACAGGCAAGGAGGGAATGGGCTATGGTG
ACTTCAAATTGCTGGCGGCGCTTGGTGCGTGGCTGGGCTGGACGATGCTGCCGACGATCATCTTATTGTCATCGCTGGTC
GGCGCCGTGGTCGGCATCGGGCTGATCGTGTTTGCCAGGCGCGGGCGCGACAAACCGATTCCGTTCGGCCCCTACCTGGC
TGCGGCGGGCTTGATCGCCTTGCTGTACGGCACGCCCCTATCCCGCCTCACGCTAGGCCTGATTGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.435	95.502	0.529
pilD	Vibrio campbellii strain DS40M4	56.107	90.657	0.509
pilD	Acinetobacter baumannii D1279779	50.549	94.464	0.478
pilD	Neisseria gonorrhoeae MS11	53.125	88.581	0.471
pilD	Acinetobacter nosocomialis M2	49.451	94.464	0.467