Detailed information NTG0912130

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: U0007_RS25595
• Genome accession: NZ_CP139973
• Coordinates: 5698507..5699835 (+)
• Length: 442 a.a.
• NCBI ID: WP_114761485.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain HAMBI_1977
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5693507..5704835

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0007_RS25575 (U0007_25575)	pgeF	5694998..5695723 (-)	726	WP_114761484.1	peptidoglycan editing factor PgeF	-
U0007_RS25580 (U0007_25580)	rluD	5695720..5696682 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
U0007_RS25585 (U0007_25585)	-	5696834..5697856 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
U0007_RS25590 (U0007_25590)	-	5697990..5698223 (+)	234	WP_062824555.1	PP0621 family protein	-
U0007_RS25595 (U0007_25595)	pilR	5698507..5699835 (+)	1329	WP_114761485.1	sigma-54-dependent transcriptional regulator	Regulator
U0007_RS25600 (U0007_25600)	thiO	5699832..5700932 (-)	1101	WP_114761486.1	glycine oxidase ThiO	-
U0007_RS25605 (U0007_25605)	-	5700987..5701388 (-)	402	WP_007924724.1	type IV pilin protein	-
U0007_RS25610 (U0007_25610)	-	5701402..5704473 (-)	3072	WP_114761487.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48861.43 Da
• Isoelectric Point: 9.0627

>NTDB_id=912130 U0007_RS25595 WP_114761485.1 5698507..5699835(+) (pilR) [Pseudomonas chlororaphis strain HAMBI_1977]
MSPRQKVLIVDDDPGIREYLEISLDRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAIHALKAGAIDFLSKPVALARLRELLNGALPGSIPPNPATGPLLGDSAAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHEQGPRACHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALLAEVHAGRFRQDLYYRLNVIELPVPALRARKADIEPLATAILE
RLAQGNGQQLARLQPSALQALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNGAHPAITPGPAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=912130 U0007_RS25595 WP_114761485.1 5698507..5699835(+) (pilR) [Pseudomonas chlororaphis strain HAMBI_1977]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGACGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGACCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCGCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGCCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGATCCACGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCACGCTTGCGCGAGCTGCTGAATGGCGCCCTGCCCGGATCGATACCACCGAACCCTGCTACCGGTCCATTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGTGGACAAATCGGCAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGAGCAGGGTCCTCGAGCCTGCCACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTGCAGGAGAAGGCGGTACGTTGCGTCGGCGGGCAACAGGAGGTCCAGGTCGATGT
ACGCATTCTCTGCGCCACCCACAAGGCGTTGCTGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCAGCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATCCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCAAGCGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACGCCAAACGGCGCCCACCCGGCCATCACGCCCGGACCGGCACAGGTGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAACACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCTATGCGCTACCGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.72	100	0.679
pilR	Acinetobacter baumannii strain A118	43.601	100	0.455