Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   U0007_RS08755 Genome accession   NZ_CP139973
Coordinates   1937319..1937954 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis strain HAMBI_1977     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932319..1942954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0007_RS08735 (U0007_08735) - 1932564..1933496 (+) 933 WP_007931649.1 ABC transporter ATP-binding protein -
  U0007_RS08740 (U0007_08740) - 1933493..1934272 (+) 780 WP_007931651.1 ABC transporter permease -
  U0007_RS08745 (U0007_08745) - 1934321..1934836 (-) 516 WP_007931653.1 DUF2062 domain-containing protein -
  U0007_RS08750 (U0007_08750) comA 1934985..1937216 (+) 2232 WP_114759697.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U0007_RS08755 (U0007_08755) exbB 1937319..1937954 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U0007_RS08760 (U0007_08760) - 1937951..1938379 (+) 429 WP_007931660.1 ExbD/TolR family protein -
  U0007_RS08765 (U0007_08765) lpxK 1938379..1939389 (+) 1011 WP_092418114.1 tetraacyldisaccharide 4'-kinase -
  U0007_RS08770 (U0007_08770) - 1939412..1939597 (+) 186 WP_007931663.1 Trm112 family protein -
  U0007_RS08775 (U0007_08775) kdsB 1939594..1940358 (+) 765 WP_009042838.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U0007_RS08780 (U0007_08780) - 1940358..1940822 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  U0007_RS08785 (U0007_08785) murB 1940819..1941838 (+) 1020 WP_114759696.1 UDP-N-acetylmuramate dehydrogenase -
  U0007_RS08790 (U0007_08790) - 1942086..1942556 (+) 471 WP_025804349.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=912121 U0007_RS08755 WP_007931657.1 1937319..1937954(+) (exbB) [Pseudomonas chlororaphis strain HAMBI_1977]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=912121 U0007_RS08755 WP_007931657.1 1937319..1937954(+) (exbB) [Pseudomonas chlororaphis strain HAMBI_1977]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCTCATCTGCTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCGCCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATTGAGGAAGCCGCCGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGTACCATCGCCGCCATGGCCCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGGATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867