Detailed information NTG0912120

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: U0007_RS08750
• Genome accession: NZ_CP139973
• Coordinates: 1934985..1937216 (+)
• Length: 743 a.a.
• NCBI ID: WP_114759697.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain HAMBI_1977
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1929985..1942216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0007_RS08725 (U0007_08725)	-	1931106..1931765 (+)	660	WP_092418112.1	transglutaminase-like domain-containing protein	-
U0007_RS08730 (U0007_08730)	-	1931808..1932431 (+)	624	WP_009042835.1	glutathione S-transferase family protein	-
U0007_RS08735 (U0007_08735)	-	1932564..1933496 (+)	933	WP_007931649.1	ABC transporter ATP-binding protein	-
U0007_RS08740 (U0007_08740)	-	1933493..1934272 (+)	780	WP_007931651.1	ABC transporter permease	-
U0007_RS08745 (U0007_08745)	-	1934321..1934836 (-)	516	WP_007931653.1	DUF2062 domain-containing protein	-
U0007_RS08750 (U0007_08750)	comA	1934985..1937216 (+)	2232	WP_114759697.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
U0007_RS08755 (U0007_08755)	exbB	1937319..1937954 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
U0007_RS08760 (U0007_08760)	-	1937951..1938379 (+)	429	WP_007931660.1	ExbD/TolR family protein	-
U0007_RS08765 (U0007_08765)	lpxK	1938379..1939389 (+)	1011	WP_092418114.1	tetraacyldisaccharide 4'-kinase	-
U0007_RS08770 (U0007_08770)	-	1939412..1939597 (+)	186	WP_007931663.1	Trm112 family protein	-
U0007_RS08775 (U0007_08775)	kdsB	1939594..1940358 (+)	765	WP_009042838.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
U0007_RS08780 (U0007_08780)	-	1940358..1940822 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
U0007_RS08785 (U0007_08785)	murB	1940819..1941838 (+)	1020	WP_114759696.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 80980.01 Da
• Isoelectric Point: 10.2100

>NTDB_id=912120 U0007_RS08750 WP_114759697.1 1934985..1937216(+) (comA) [Pseudomonas chlororaphis strain HAMBI_1977]
MRTGMLAFAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQSALDDRLAAPLDGQTRWLEG
RVVGLPQQAEGLVRFELEDGRARRGRIPQRLRLAWHGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRRPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWIAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAQGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSAALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=912120 U0007_RS08750 WP_114759697.1 1934985..1937216(+) (comA) [Pseudomonas chlororaphis strain HAMBI_1977]
ATGCGCACAGGGATGCTGGCGTTTGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGTT
GGCAGTGCTGCCGGTAGTGGCCTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCCCTTTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATCGGCGCTGGATGATCGTTTGGCGGCACCACTCGACGGGCAGACTCGCTGGCTCGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGGCCGAGGGGCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGGCGAAT
CCCGCAACGCCTGCGCCTGGCCTGGCATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGTTGCTGGCCCAGCGCATCGGCGCCACGGGT
ACGGTCAAGGATGGGCAATTGCTGGCCGCCACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCACGGGCGCGCCGGCGGCCTGGCGGCCCTGGTGCTGGGCGACGGTTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCAGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGTTACGGCCTGTGGCCCGGACGCAGGCCCTGGCTGCCCTGGGCCTGCGGGCTGGCATTCGCCTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGCGCCTGGTGGCCGTTCTTGCTGGCATTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGCTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACCTGCTGTT
CCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCGTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCCGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGTTGTTGGTGGTG
TTCCCACCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGGGTAGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCCAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAA
CGCGCCTTGCTGGATACCCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGTTCGTCGTC
CGCGGCCCTGCTCAAGGCTCTTGCGCCTTCGGCGGTGCTGATCTCCCGTGGGCACGGCAATGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGTACTTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624