Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   U0544_RS05960 Genome accession   NZ_CP139944
Coordinates   1101301..1102869 (-) Length   522 a.a.
NCBI ID   WP_016802656.1    Uniprot ID   -
Organism   Acinetobacter pittii strain CARB128     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1096301..1107869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS05945 (U0544_05965) gpmI 1097114..1098661 (+) 1548 WP_002121200.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  U0544_RS05950 (U0544_05970) ctpA 1098677..1099861 (+) 1185 WP_002121269.1 S41 family peptidase -
  U0544_RS05955 (U0544_05975) pilR 1099865..1101277 (-) 1413 WP_002121217.1 sigma-54-dependent transcriptional regulator Regulator
  U0544_RS05960 (U0544_05980) pilS 1101301..1102869 (-) 1569 WP_016802656.1 sensor histidine kinase Regulator
  U0544_RS05965 (U0544_05985) gacA 1102880..1103515 (-) 636 WP_002121174.1 response regulator -
  U0544_RS05970 (U0544_05990) pbpG 1103728..1104774 (+) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  U0544_RS05975 (U0544_05995) thrC 1104882..1106021 (-) 1140 WP_002048893.1 threonine synthase -
  U0544_RS05980 (U0544_06000) hom 1106076..1107377 (-) 1302 WP_002121263.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59067.65 Da        Isoelectric Point: 6.5703

>NTDB_id=911918 U0544_RS05960 WP_016802656.1 1101301..1102869(-) (pilS) [Acinetobacter pittii strain CARB128]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDTSLQQPALYSYTLLGYSILSLLQLLCFKFVATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDSEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIKLNDFLKTLLDEDLSDVK
HTIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=911918 U0544_RS05960 WP_016802656.1 1101301..1102869(-) (pilS) [Acinetobacter pittii strain CARB128]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACACTAGTCTACAACAACCCGCTTTATATTCTT
ACACACTACTCGGCTATTCAATCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTGTTGCTACTCAGGCAACAAGGCAA
CTTATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCAGTAGGCGAACCCAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCTATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCTTTA
TTGGCCTTCTTGTTTTTTGTAGTACACGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCGCTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTCC
TAGATGAAAACTACGATATTGTTTTAAGTAATCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACTTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCACAGCAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGACAACTCTCAGCAAGT
ATTGCCCATGAGATTCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTGCTCAAAGATAGTGATTCAGAACAGCA
AAACACTTTGCGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACGTATCCCATCCAGATTAAATTAAATGACTTCTTAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATACGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTCCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGACTCTCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.061

100

0.941