Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   U0544_RS02935 Genome accession   NZ_CP139944
Coordinates   459586..460227 (-) Length   213 a.a.
NCBI ID   WP_002116944.1    Uniprot ID   A0A009RUZ9
Organism   Acinetobacter pittii strain CARB128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 454586..465227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS02915 (U0544_02920) aroK 455491..456060 (-) 570 WP_002116987.1 shikimate kinase AroK -
  U0544_RS02920 (U0544_02925) pilQ 456072..458237 (-) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  U0544_RS02925 (U0544_02930) pilP 458300..458827 (-) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  U0544_RS02930 (U0544_02935) pilO 458838..459589 (-) 752 Protein_483 type 4a pilus biogenesis protein PilO -
  U0544_RS02935 (U0544_02940) pilN 459586..460227 (-) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  U0544_RS02940 (U0544_02945) pilM 460227..461285 (-) 1059 WP_031945632.1 pilus assembly protein PilM Machinery gene
  U0544_RS02945 (U0544_02950) ponA 461446..464007 (+) 2562 WP_326938885.1 penicillin-binding protein PBP1a -
  U0544_RS02950 (U0544_02955) rrmA 464063..464887 (-) 825 WP_002117059.1 putative RNA methyltransferase -
  U0544_RS02955 (U0544_02960) - 464890..465222 (-) 333 WP_002116981.1 DUF7709 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23921.36 Da        Isoelectric Point: 5.4186

>NTDB_id=911909 U0544_RS02935 WP_002116944.1 459586..460227(-) (pilN) [Acinetobacter pittii strain CARB128]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=911909 U0544_RS02935 WP_002116944.1 459586..460227(-) (pilN) [Acinetobacter pittii strain CARB128]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685