Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   U0544_RS02925 Genome accession   NZ_CP139944
Coordinates   458300..458827 (-) Length   175 a.a.
NCBI ID   WP_002116864.1    Uniprot ID   A0AAN4MGG3
Organism   Acinetobacter pittii strain CARB128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453300..463827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS02905 (U0544_02910) - 453494..454363 (-) 870 WP_002117066.1 hypothetical protein -
  U0544_RS02910 (U0544_02915) aroB 454380..455462 (-) 1083 WP_002116776.1 3-dehydroquinate synthase -
  U0544_RS02915 (U0544_02920) aroK 455491..456060 (-) 570 WP_002116987.1 shikimate kinase AroK -
  U0544_RS02920 (U0544_02925) pilQ 456072..458237 (-) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  U0544_RS02925 (U0544_02930) pilP 458300..458827 (-) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  U0544_RS02930 (U0544_02935) pilO 458838..459589 (-) 752 Protein_483 type 4a pilus biogenesis protein PilO -
  U0544_RS02935 (U0544_02940) pilN 459586..460227 (-) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  U0544_RS02940 (U0544_02945) pilM 460227..461285 (-) 1059 WP_031945632.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19265.32 Da        Isoelectric Point: 9.0270

>NTDB_id=911908 U0544_RS02925 WP_002116864.1 458300..458827(-) (pilP) [Acinetobacter pittii strain CARB128]
MKLKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=911908 U0544_RS02925 WP_002116864.1 458300..458827(-) (pilP) [Acinetobacter pittii strain CARB128]
ATGAAACTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGATGCTGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTACAGGTAGGGAATTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATTTGGTGGAGATTGTTCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88.571

100

0.886
  comL Acinetobacter baylyi ADP1

75.152

94.286

0.709