Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   U0544_RS02430 Genome accession   NZ_CP139944
Coordinates   355400..356029 (+) Length   209 a.a.
NCBI ID   WP_002116884.1    Uniprot ID   A0A8I1HEA6
Organism   Acinetobacter pittii strain CARB128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350400..361029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS02415 (U0544_02420) - 351462..352445 (-) 984 WP_002117028.1 putative solute-binding protein -
  U0544_RS02420 (U0544_02425) - 352526..353341 (-) 816 WP_002116824.1 NAD-dependent epimerase/dehydratase family protein -
  U0544_RS02425 (U0544_02430) recG 353362..355407 (+) 2046 WP_002116963.1 ATP-dependent DNA helicase RecG -
  U0544_RS02430 (U0544_02435) comF 355400..356029 (+) 630 WP_002116884.1 ComF family protein Machinery gene
  U0544_RS02435 (U0544_02440) mutT 356031..356432 (-) 402 WP_002116701.1 NUDIX hydrolase -
  U0544_RS02440 (U0544_02445) - 356447..357028 (-) 582 WP_002116857.1 TIGR00730 family Rossman fold protein -
  U0544_RS02445 (U0544_02450) - 357187..358200 (+) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  U0544_RS02450 (U0544_02455) - 358273..358560 (-) 288 WP_002116926.1 STAS domain-containing protein -
  U0544_RS02455 (U0544_02460) - 358572..359213 (-) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  U0544_RS02460 (U0544_02465) - 359240..359920 (-) 681 WP_002116957.1 outer membrane lipid asymmetry maintenance protein MlaD -
  U0544_RS02465 (U0544_02470) mlaE 359920..360696 (-) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24635.84 Da        Isoelectric Point: 9.9325

>NTDB_id=911898 U0544_RS02430 WP_002116884.1 355400..356029(+) (comF) [Acinetobacter pittii strain CARB128]
MFNFLNFKHLIKLFSPCSLCELDTREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKELTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATLKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=911898 U0544_RS02430 WP_002116884.1 355400..356029(+) (comF) [Acinetobacter pittii strain CARB128]
ATGTTTAATTTTTTAAACTTCAAGCATCTTATTAAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGACACGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAAATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGTTTAAACGAGCACTCTCAAAAAGAACTTACTCGGCTAGAACGCTTTGAAAATATCGAACAACAATTTTTACCCCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
CCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCGGCAACACTAAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.495

98.565

0.823
  comF Acinetobacter baumannii D1279779

82.524

98.565

0.813