Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   U0320_RS03550 Genome accession   NZ_CP139868
Coordinates   696458..697330 (+) Length   290 a.a.
NCBI ID   WP_322407877.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GP11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 691458..702330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0320_RS03530 (U0320_03525) sucC 691571..692737 (+) 1167 WP_001020799.1 ADP-forming succinate--CoA ligase subunit beta -
  U0320_RS03535 (U0320_03530) sucD 692759..693667 (+) 909 WP_000110251.1 succinate--CoA ligase subunit alpha -
  U0320_RS03540 (U0320_03535) - 693894..695013 (+) 1120 Protein_671 LysM peptidoglycan-binding domain-containing protein -
  U0320_RS03545 (U0320_03540) fmhC 695041..696285 (+) 1245 WP_000672869.1 FemA/FemB family glycyltransferase FmhC -
  U0320_RS03550 (U0320_03545) dprA 696458..697330 (+) 873 WP_322407877.1 DNA-processing protein DprA Machinery gene
  U0320_RS03555 (U0320_03550) topA 697504..699579 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  U0320_RS03560 (U0320_03555) trmFO 699735..701042 (+) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33536.94 Da        Isoelectric Point: 9.5094

>NTDB_id=911617 U0320_RS03550 WP_322407877.1 696458..697330(+) (dprA) [Staphylococcus aureus strain GP11]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENAHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=911617 U0320_RS03550 WP_322407877.1 696458..697330(+) (dprA) [Staphylococcus aureus strain GP11]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGCTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993