Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   U0450_RS07270 Genome accession   NZ_CP139863
Coordinates   1418671..1419381 (-) Length   236 a.a.
NCBI ID   WP_000760675.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P2112     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1413671..1424381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0450_RS07250 amiF 1414579..1415505 (+) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  U0450_RS07255 - 1416124..1416933 (+) 810 Protein_1383 ABC transporter substrate-binding protein -
  U0450_RS07260 - 1416945..1417822 (+) 878 Protein_1384 ABC transporter permease -
  U0450_RS07265 - 1417835..1418638 (+) 804 WP_000157656.1 ABC transporter ATP-binding protein -
  U0450_RS07270 treR 1418671..1419381 (-) 711 WP_000760675.1 trehalose operon repressor Regulator
  U0450_RS07275 treP 1419566..1421533 (+) 1968 WP_000514311.1 PTS system trehalose-specific EIIBC component -
  U0450_RS07280 treC 1421711..1423336 (+) 1626 WP_322396493.1 alpha,alpha-phosphotrehalase -
  U0450_RS07285 - 1423592..1423840 (+) 249 WP_000364990.1 YneF family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27621.80 Da        Isoelectric Point: 8.9698

>NTDB_id=911592 U0450_RS07270 WP_000760675.1 1418671..1419381(-) (treR) [Streptococcus pneumoniae strain 15P2112]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKEPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=911592 U0450_RS07270 WP_000760675.1 1418671..1419381(-) (treR) [Streptococcus pneumoniae strain 15P2112]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGAACCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.746

100

0.597