Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABVR75_RS07955 Genome accession   NZ_CP159464
Coordinates   1542587..1543393 (-) Length   268 a.a.
NCBI ID   WP_061827272.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain CBA3649     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1537587..1548393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR75_RS07930 (ABVR75_07930) - 1537983..1538414 (+) 432 WP_011375163.1 GNAT family N-acetyltransferase -
  ABVR75_RS07935 (ABVR75_07935) - 1538490..1538963 (+) 474 WP_099947437.1 hypothetical protein -
  ABVR75_RS07940 (ABVR75_07940) - 1539096..1540805 (+) 1710 WP_100970265.1 glycosyltransferase family 8 protein -
  ABVR75_RS07945 (ABVR75_07945) - 1540874..1541410 (-) 537 WP_011375166.1 DUF402 domain-containing protein -
  ABVR75_RS07950 (ABVR75_07950) mutY 1541497..1542600 (-) 1104 WP_016265509.1 A/G-specific adenine glycosylase -
  ABVR75_RS07955 (ABVR75_07955) recX 1542587..1543393 (-) 807 WP_061827272.1 recombination regulator RecX Regulator
  ABVR75_RS07960 (ABVR75_07960) - 1543395..1543574 (-) 180 WP_011375169.1 hypothetical protein -
  ABVR75_RS07965 (ABVR75_07965) rlmD 1543960..1545351 (+) 1392 WP_011375170.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  ABVR75_RS07970 (ABVR75_07970) - 1545567..1546073 (-) 507 WP_011375171.1 DUF805 domain-containing protein -
  ABVR75_RS07975 (ABVR75_07975) - 1546164..1546634 (+) 471 WP_076645410.1 nucleoside 2-deoxyribosyltransferase -
  ABVR75_RS07980 (ABVR75_07980) - 1546721..1546963 (+) 243 WP_011375173.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31086.03 Da        Isoelectric Point: 6.0698

>NTDB_id=911591 ABVR75_RS07955 WP_061827272.1 1542587..1543393(-) (recX) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QYLRDHEITLEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLSRIIDELALEEDSDSEADALAALGEKKWRRYRLLEPRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=911591 ABVR75_RS07955 WP_061827272.1 1542587..1543393(-) (recX) [Latilactobacillus sakei subsp. sakei strain CBA3649]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGGCGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGTGACATTCAAA
AAGAAGATGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAATACTTGCGTGATCATGAAATTACGCTAGAAGGCATTGAAACCAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCGGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCATTGACGTTATATACAGATGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAGCAAAAGATTAAACAGGGCTT
GATGCAAAAGGGCTTTGGTGGTGATAATTTAAGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGTGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTATCGCCTATTAGAACCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
CGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-203)

RecX family (RecX_HTH2)

(204-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

37.262

98.134

0.366