Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   ABVR75_RS06025 Genome accession   NZ_CP159464
Coordinates   1169140..1170186 (-) Length   348 a.a.
NCBI ID   WP_035145546.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain CBA3649     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1164140..1175186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR75_RS05995 (ABVR75_05995) rpsT 1164206..1164460 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  ABVR75_RS06000 (ABVR75_06000) holA 1164528..1165556 (-) 1029 WP_025015735.1 DNA polymerase III subunit delta -
  ABVR75_RS06005 (ABVR75_06005) comEC 1165553..1166488 (-) 936 WP_353891321.1 ComEC/Rec2 family competence protein Machinery gene
  ABVR75_RS06010 (ABVR75_06010) comEC 1166491..1167615 (-) 1125 WP_353891322.1 ComEC/Rec2 family competence protein Machinery gene
  ABVR75_RS06015 (ABVR75_06015) - 1167813..1168301 (-) 489 WP_011374770.1 ComE operon protein 2 -
  ABVR75_RS06020 (ABVR75_06020) comEA 1168359..1169066 (-) 708 WP_226474265.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABVR75_RS06025 (ABVR75_06025) sepM 1169140..1170186 (-) 1047 WP_035145546.1 SepM family pheromone-processing serine protease Regulator
  ABVR75_RS06030 (ABVR75_06030) coaD 1170188..1170685 (-) 498 WP_025015732.1 pantetheine-phosphate adenylyltransferase -
  ABVR75_RS06035 (ABVR75_06035) rsmD 1170698..1171252 (-) 555 WP_016265217.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABVR75_RS06040 (ABVR75_06040) - 1171257..1171547 (-) 291 WP_279850973.1 YlbG family protein -
  ABVR75_RS06045 (ABVR75_06045) - 1171571..1172659 (-) 1089 WP_011374776.1 CAP-associated domain-containing protein -
  ABVR75_RS06050 (ABVR75_06050) - 1172670..1173857 (-) 1188 WP_353891323.1 FtsW/RodA/SpoVE family cell cycle protein -
  ABVR75_RS06055 (ABVR75_06055) - 1173866..1174162 (-) 297 WP_112206198.1 DUF1507 family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38125.90 Da        Isoelectric Point: 9.5178

>NTDB_id=911569 ABVR75_RS06025 WP_035145546.1 1169140..1170186(-) (sepM) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MPKNKKLTKRLIVIVVLIIVAVVCLMPTGYYIEGAGTAENTSQYVKVDGKHDHQKGHFMLTTVGVRGPVTPLQLLLSKTQ
PFTEIESRDELMGNEDTEAYEQIQKYYMDSSINAAVEAAYKKADKAYHTKYLGVYVMSMLDNSTFKDDLAVGDTITAIDH
HQFKNANAFVKYVQGLKVGQKVTVSYDHGQKHQTATHRLIKLPGTHHPGLGITLTDHSKIETDIPVKIDAGDIGGPSAGL
MFTLQVYNQLTKQNLQKGRKIAGTGTMAADGTVGAIGGIDKKVLVASQEGATVFFAPNDPVTKAILKVDPDYQNNYTIAK
NAAKKIHTKMKIVPVKTLDDALTYLKNH

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=911569 ABVR75_RS06025 WP_035145546.1 1169140..1170186(-) (sepM) [Latilactobacillus sakei subsp. sakei strain CBA3649]
ATGCCCAAAAATAAGAAACTGACAAAACGATTAATTGTAATTGTGGTTTTAATCATTGTTGCAGTTGTTTGTTTAATGCC
CACTGGCTATTATATTGAAGGTGCCGGGACCGCAGAAAATACCAGCCAATATGTTAAGGTCGACGGTAAACATGATCATC
AAAAAGGCCATTTTATGCTGACAACAGTTGGTGTCAGAGGCCCAGTAACACCATTGCAATTATTATTGTCCAAGACGCAA
CCTTTTACGGAAATTGAAAGTCGTGACGAATTGATGGGCAATGAAGATACCGAAGCTTACGAACAGATTCAAAAGTACTA
TATGGATAGTTCAATTAACGCTGCCGTTGAAGCCGCCTATAAAAAAGCTGATAAGGCCTACCATACGAAGTATCTGGGCG
TTTATGTGATGTCGATGTTAGACAACTCCACTTTTAAAGATGATTTAGCAGTCGGTGATACGATTACCGCGATTGATCAT
CATCAATTTAAAAATGCCAATGCTTTTGTAAAGTATGTCCAAGGTTTGAAAGTTGGTCAAAAGGTCACGGTTAGTTACGA
TCATGGTCAAAAACATCAAACGGCAACGCATCGTTTGATTAAGTTACCAGGCACGCATCATCCAGGTCTTGGGATTACGT
TAACCGATCACTCTAAGATTGAGACTGATATTCCGGTTAAAATTGATGCCGGTGATATTGGGGGCCCATCTGCAGGCTTG
ATGTTTACGTTGCAAGTTTATAATCAATTAACGAAGCAAAATCTCCAAAAGGGTCGTAAAATTGCGGGGACCGGCACAAT
GGCTGCTGATGGCACTGTAGGTGCTATTGGTGGGATTGATAAAAAGGTACTGGTCGCTAGTCAAGAAGGCGCAACCGTCT
TTTTTGCACCTAATGATCCTGTAACAAAGGCAATTTTAAAGGTTGATCCTGATTATCAAAATAATTATACAATCGCTAAA
AATGCCGCTAAAAAAATTCATACTAAGATGAAGATCGTACCGGTCAAAACCTTAGATGATGCGTTAACTTATTTGAAAAA
TCATTAA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(131-196)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(221-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

44.253

100

0.443