Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ABVR75_RS06010 Genome accession   NZ_CP159464
Coordinates   1166491..1167615 (-) Length   374 a.a.
NCBI ID   WP_353891322.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain CBA3649     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1161491..1172615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR75_RS05985 (ABVR75_05985) - 1161712..1163430 (-) 1719 WP_011374765.1 ribonuclease J -
  ABVR75_RS05990 (ABVR75_05990) rpsO 1163658..1163927 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  ABVR75_RS05995 (ABVR75_05995) rpsT 1164206..1164460 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  ABVR75_RS06000 (ABVR75_06000) holA 1164528..1165556 (-) 1029 WP_025015735.1 DNA polymerase III subunit delta -
  ABVR75_RS06005 (ABVR75_06005) comEC 1165553..1166488 (-) 936 WP_353891321.1 ComEC/Rec2 family competence protein Machinery gene
  ABVR75_RS06010 (ABVR75_06010) comEC 1166491..1167615 (-) 1125 WP_353891322.1 ComEC/Rec2 family competence protein Machinery gene
  ABVR75_RS06015 (ABVR75_06015) - 1167813..1168301 (-) 489 WP_011374770.1 ComE operon protein 2 -
  ABVR75_RS06020 (ABVR75_06020) comEA 1168359..1169066 (-) 708 WP_226474265.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABVR75_RS06025 (ABVR75_06025) sepM 1169140..1170186 (-) 1047 WP_035145546.1 SepM family pheromone-processing serine protease Regulator
  ABVR75_RS06030 (ABVR75_06030) coaD 1170188..1170685 (-) 498 WP_025015732.1 pantetheine-phosphate adenylyltransferase -
  ABVR75_RS06035 (ABVR75_06035) rsmD 1170698..1171252 (-) 555 WP_016265217.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABVR75_RS06040 (ABVR75_06040) - 1171257..1171547 (-) 291 WP_279850973.1 YlbG family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 42802.68 Da        Isoelectric Point: 9.4426

>NTDB_id=911566 ABVR75_RS06010 WP_353891322.1 1166491..1167615(-) (comEC) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MTQPQQPVAQYFKVQPDAIQVAGDSVQLTAIGQQDGQTIKAYYRCQTFAEKRQWQQVRHPVLFYGAKDFERIQGATNQNE
FDYAHFLAQQKRCFYQLTLAKETTFALRRPSSGLDWLHYWRQTCALYLRKLPTALRFHAQTLLLGLREAQVDHYQVVLGR
LGIIHLLSLSGLHVFYLVQVIRWCATYCRIPREWLNCMLFGLLPVYALLVGGTTSISRAIALILCRLLCEQLGIRQSRLD
SWSLVLLVNLFWQPYLLHSMGGILSYLMAFALIYIGEGSTFKVAYWLSLLSLPVCLRFNYRWHVLTIMMNALVTPIYLPV
VLGLVIVASVMLPVSNLVVNGCEWLLQLIYKGLGLVAQIPHAMITFGKIPLLPY

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=911566 ABVR75_RS06010 WP_353891322.1 1166491..1167615(-) (comEC) [Latilactobacillus sakei subsp. sakei strain CBA3649]
ATGACACAACCACAACAACCGGTAGCACAGTATTTTAAAGTGCAACCCGATGCGATTCAAGTCGCGGGCGACAGTGTTCA
ATTAACGGCAATCGGCCAACAAGATGGTCAGACTATTAAGGCTTATTATCGCTGCCAAACGTTCGCCGAGAAGAGGCAGT
GGCAACAAGTACGACACCCCGTTTTGTTCTATGGCGCAAAAGATTTTGAACGTATACAAGGAGCTACCAATCAAAATGAG
TTTGATTATGCCCATTTTTTAGCGCAACAGAAGCGCTGCTTTTACCAACTGACGTTAGCCAAAGAAACAACTTTTGCGCT
GAGACGTCCTAGTAGCGGTTTGGATTGGCTACATTATTGGCGCCAAACGTGTGCGCTGTATTTACGTAAGTTACCAACAG
CACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTGCGGGAAGCGCAAGTTGACCATTACCAGGTTGTTTTGGGCCGC
TTAGGGATTATTCATCTATTAAGTCTATCAGGGTTGCACGTGTTTTATTTAGTGCAAGTCATTCGGTGGTGTGCGACTTA
TTGCCGTATACCGCGTGAGTGGTTAAACTGTATGTTATTTGGGCTATTGCCGGTATATGCCTTACTGGTTGGTGGTACGA
CAAGCATTAGTCGCGCGATTGCGCTTATTTTATGCCGGTTACTTTGCGAACAGTTGGGCATTCGGCAATCAAGATTAGAT
AGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCAGCCTTATTTGCTACATAGTATGGGCGGGATTTTAAGTTATTT
GATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCACGTTTAAAGTTGCTTACTGGCTAAGTTTATTGAGTTTGCCGG
TTTGCTTACGCTTTAATTATCGCTGGCACGTGCTGACGATAATGATGAATGCCTTAGTAACGCCTATCTATCTACCAGTT
GTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACCTGTTAGCAATCTAGTAGTTAACGGATGTGAGTGGCTGTTACA
GTTGATTTACAAAGGCTTAGGATTAGTCGCTCAAATCCCCCATGCGATGATTACGTTTGGTAAAATCCCCTTGTTACCCT
ATTGA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(142-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

96.515

99.733

0.963