Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ABVR75_RS05935 Genome accession   NZ_CP159464
Coordinates   1150848..1152626 (-) Length   592 a.a.
NCBI ID   WP_234057475.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain CBA3649     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1145848..1157626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR75_RS05915 (ABVR75_05915) - 1147552..1148022 (-) 471 WP_025015740.1 MarR family transcriptional regulator -
  ABVR75_RS05920 (ABVR75_05920) - 1148124..1148963 (-) 840 WP_025015739.1 YitT family protein -
  ABVR75_RS05925 (ABVR75_05925) - 1149094..1150122 (-) 1029 WP_035145850.1 aldehyde reductase -
  ABVR75_RS05930 (ABVR75_05930) - 1150235..1150804 (+) 570 WP_025015738.1 TetR/AcrR family transcriptional regulator -
  ABVR75_RS05935 (ABVR75_05935) uvrC 1150848..1152626 (-) 1779 WP_234057475.1 excinuclease ABC subunit UvrC Machinery gene
  ABVR75_RS05940 (ABVR75_05940) - 1152706..1153437 (-) 732 WP_234057476.1 amino acid ABC transporter ATP-binding protein -
  ABVR75_RS05945 (ABVR75_05945) - 1153430..1154893 (-) 1464 WP_035148462.1 ABC transporter substrate-binding protein/permease -
  ABVR75_RS05950 (ABVR75_05950) - 1155028..1155180 (+) 153 WP_011374758.1 SPJ_0845 family protein -
  ABVR75_RS05955 (ABVR75_05955) - 1155255..1155548 (-) 294 WP_011374759.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  ABVR75_RS05960 (ABVR75_05960) yihA 1155548..1156147 (-) 600 WP_011374760.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ABVR75_RS05965 (ABVR75_05965) clpX 1156294..1157547 (-) 1254 WP_011374761.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 67751.32 Da        Isoelectric Point: 9.6587

>NTDB_id=911563 ABVR75_RS05935 WP_234057475.1 1150848..1152626(-) (uvrC) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MASEHIEHKLALLPALPGCYLMKDINAQIIYVGKAKNLKNRVRSYFKSSHEGKTAKLVSEIVDFETIITSTNKEAFLLEI
TLIQKHQPYFNIKLKRGTGYPYIKITNERDPRLLITGDVKKDGGYYFGPYPDVYAAQETLRFLQRVYPLRRCQGHQGRPC
LYYHMGQCLGACFQEVPEAAYTEQIKKIKRFLNGQVDNVKKDLTEKMATAAQEMQFERAAELRDQLRYIEATVEKQKIIS
SDHTPRDLFAFYMDKGWLSIQIFFIRQARLIRREKRLFPCVNTPEEELATFILQWYNRKNNVLPREILVPDGIEKQVLSD
ILQVPIRTPQRGEKKALMEMAQKNSRLVLEEKFRLLELDNRKTVGAQDEIMDALGLPHGHVIEAFDHSHIQGTDPVSAMV
TFVDGRAEKKLYRKYKLTQTAERAGANEDANTREVIYRRYSRLLKEGKALPDLILMDGGVVELNAAKDVLENELGLTIPV
AGMVKDNHHKTASLLFGEADQTIQLDPKSQGFYLLTRIQDEVHRFAISFHRQLRGKNSLSSKLDDIKGVGPKTRTKLLKN
FGSMKHIKDASVEELEALGISKTVAQTIKLSL

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=911563 ABVR75_RS05935 WP_234057475.1 1150848..1152626(-) (uvrC) [Latilactobacillus sakei subsp. sakei strain CBA3649]
TTGGCAAGTGAACATATCGAACATAAATTAGCCTTATTACCAGCCTTACCAGGCTGTTATTTGATGAAAGATATTAACGC
ACAGATTATCTACGTGGGGAAGGCCAAGAATCTTAAGAACCGGGTCCGCTCGTATTTTAAGAGTAGCCACGAAGGTAAGA
CGGCCAAATTGGTCTCTGAAATTGTCGATTTTGAAACAATCATTACATCGACAAATAAAGAGGCCTTTTTGTTGGAAATT
ACGTTAATCCAAAAGCACCAACCCTACTTTAATATCAAGTTAAAACGGGGGACGGGCTATCCGTACATCAAGATCACCAA
TGAACGTGATCCGCGCTTATTGATTACTGGCGATGTCAAAAAAGATGGTGGCTATTATTTTGGCCCGTATCCGGACGTTT
ATGCGGCTCAGGAGACTTTACGCTTCTTGCAACGTGTTTACCCCTTGCGGCGCTGTCAGGGTCATCAAGGACGTCCTTGT
TTGTACTATCATATGGGGCAGTGCTTGGGGGCTTGCTTCCAAGAAGTACCAGAAGCAGCCTATACCGAACAGATTAAGAA
AATTAAACGCTTTTTAAATGGGCAAGTCGACAATGTTAAGAAGGATTTAACGGAGAAAATGGCGACGGCTGCCCAGGAGA
TGCAATTTGAGCGGGCCGCTGAGTTGCGTGATCAATTACGCTATATTGAAGCAACCGTTGAAAAACAAAAGATTATTTCT
AGCGATCATACACCGCGTGATTTATTTGCCTTTTACATGGATAAAGGCTGGTTGTCGATTCAAATCTTCTTTATTCGCCA
AGCACGTTTAATTCGGCGGGAAAAACGTCTCTTCCCATGTGTGAATACGCCGGAAGAAGAATTGGCGACCTTTATTCTCC
AGTGGTATAACCGTAAGAATAATGTGTTACCACGGGAAATTCTCGTGCCAGATGGGATCGAAAAGCAAGTCTTATCCGAT
ATTTTGCAAGTACCAATTCGAACGCCACAACGGGGAGAGAAAAAAGCCTTGATGGAAATGGCGCAAAAAAATAGCCGTCT
GGTATTAGAAGAAAAGTTCCGCTTATTGGAACTCGATAATCGCAAGACGGTTGGTGCGCAAGATGAAATTATGGATGCAC
TCGGCTTACCCCATGGTCATGTTATCGAAGCATTCGATCATTCGCATATTCAAGGGACCGATCCGGTGTCGGCGATGGTC
ACATTTGTTGATGGCCGCGCTGAGAAGAAGCTTTATCGGAAGTATAAATTAACCCAGACGGCAGAGCGCGCCGGCGCCAA
CGAAGATGCCAATACGCGCGAGGTGATCTATCGCCGTTATTCACGCTTGCTAAAAGAGGGCAAAGCGCTGCCTGACTTAA
TTTTAATGGATGGTGGGGTAGTTGAACTCAATGCCGCCAAAGACGTCTTAGAAAACGAACTAGGGCTCACAATTCCAGTT
GCGGGGATGGTTAAGGATAATCACCATAAAACAGCTTCGTTATTATTTGGTGAAGCCGATCAAACGATTCAGCTTGATCC
TAAGAGTCAGGGCTTTTACTTATTGACGCGAATTCAAGATGAAGTCCATCGCTTTGCGATTAGTTTTCACCGCCAGTTAC
GTGGTAAGAATTCGTTGAGTTCTAAGTTAGATGATATCAAGGGGGTTGGTCCGAAAACGCGGACGAAACTCTTGAAGAAT
TTTGGCTCGATGAAGCATATTAAAGATGCGTCTGTTGAAGAACTTGAAGCACTCGGAATCTCGAAGACAGTTGCGCAAAC
CATTAAATTGTCACTATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-527)

UvrB/uvrC motif (UVR)

(197-231)

Helix-hairpin-helix domain (HHH_5)

(542-592)

GIY-YIG catalytic domain (GIY-YIG)

(18-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

50.767

99.155

0.503
  uvrC Streptococcus pneumoniae R6

50.426

99.155

0.5
  uvrC Streptococcus pneumoniae D39

50.426

99.155

0.5