Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   ABVR75_RS04060 Genome accession   NZ_CP159464
Coordinates   775590..777632 (+) Length   680 a.a.
NCBI ID   WP_231953409.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain CBA3649     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 770590..782632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR75_RS04035 (ABVR75_04035) rpe 770910..771572 (+) 663 WP_016264866.1 ribulose-phosphate 3-epimerase -
  ABVR75_RS04040 (ABVR75_04040) - 771559..772209 (+) 651 WP_016264867.1 thiamine diphosphokinase -
  ABVR75_RS04045 (ABVR75_04045) rpmB 772558..772743 (-) 186 WP_004265581.1 50S ribosomal protein L28 -
  ABVR75_RS04050 (ABVR75_04050) - 773046..773408 (+) 363 WP_016264868.1 Asp23/Gls24 family envelope stress response protein -
  ABVR75_RS04055 (ABVR75_04055) - 773472..775142 (+) 1671 WP_025015865.1 DAK2 domain-containing protein -
  ABVR75_RS04060 (ABVR75_04060) recG/mmsA 775590..777632 (+) 2043 WP_231953409.1 ATP-dependent DNA helicase RecG Machinery gene
  ABVR75_RS04065 (ABVR75_04065) plsX 777652..778665 (+) 1014 WP_016264871.1 phosphate acyltransferase PlsX -
  ABVR75_RS04070 (ABVR75_04070) acpP 778812..779054 (+) 243 WP_011374409.1 acyl carrier protein -
  ABVR75_RS04075 (ABVR75_04075) - 779527..781173 (+) 1647 WP_016264872.1 peptide ABC transporter substrate-binding protein -
  ABVR75_RS04080 (ABVR75_04080) opp3b 781243..782178 (+) 936 WP_011374411.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75826.29 Da        Isoelectric Point: 7.1154

>NTDB_id=911550 ABVR75_RS04060 WP_231953409.1 775590..777632(+) (recG/mmsA) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MLSLTDSVTVLTGVGPKRLTALNQLGIATISDLLYYFPFRYEDLKVKDLSEAVDQEKVTLKGTVVADPVVSRWGPGKTRL
NVRLLINHDVIMVTFFNQPYLKDKFEAGVDIAVYGKWDARRNSLTGMKVLAVQSADNPSFAAIYSTNKNVRQGTLVKLIR
EAFDNYRNVIPDLIPADIRERYKLVSEVELIAGMHFPESYPEAKQARRTAIFHEFFLYQLQLQAIKQADRHVENGLALPY
QNAALKEFIKTLPFDLTDAQKRVVNEICLDLKAPAHMNRLLQGDVGSGKTIVAAIAMFAAVTAGFQAALMVPTEILAEQH
YQSLQKLYAPMNVTVGLLTGSTTAKERRTLLADIESGRINIIVGTHALIQDAVVYHKLGFAVIDEQHRFGVNQRRVLREK
GLQPDMLAMTATPIPRTLAITAYGEMDVSTIDELPKGRIPIETSWVRSNQVEQALSFVQKQLADNSQVFAITPLIAESEQ
MDLKNAEEIYATLADRFEPQYHVALLHGKLKDDEKNRIMTAFSNNEIQLLVSTTVVEVGVDVPNATVMMIFDADRFGLAQ
LHQLRGRVGRGKKKAYCLLIADPKNQQGVDRMTIMTETTNGFVVAQKDLELRGPGEVFGDRQSGLPVFKVGDPVADFASL
QVAQQEVQKIFTVDPTFSQPAYAPLKAYLAQQKQNYQTLD

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=911550 ABVR75_RS04060 WP_231953409.1 775590..777632(+) (recG/mmsA) [Latilactobacillus sakei subsp. sakei strain CBA3649]
GTGTTAAGTTTAACGGATTCTGTGACTGTTTTAACGGGTGTTGGCCCGAAGCGTTTGACAGCCCTCAATCAATTAGGAAT
CGCAACAATCAGTGATCTATTGTATTATTTTCCGTTTCGTTACGAGGATTTAAAGGTTAAGGATCTCTCAGAAGCGGTCG
ATCAGGAAAAGGTCACCTTAAAAGGAACCGTTGTCGCTGATCCAGTCGTCAGTCGTTGGGGACCGGGTAAGACACGGCTA
AACGTCCGGTTATTGATTAATCATGATGTCATTATGGTGACTTTTTTCAATCAACCCTACTTGAAGGATAAATTTGAAGC
AGGCGTTGATATTGCTGTTTATGGTAAATGGGATGCTAGACGGAATAGTTTAACCGGGATGAAGGTTTTAGCGGTTCAAT
CGGCTGATAATCCTTCGTTCGCGGCGATTTATTCAACCAATAAAAACGTGCGTCAAGGCACACTCGTAAAATTGATTCGC
GAAGCGTTTGATAATTATCGCAATGTCATTCCGGATTTGATTCCGGCCGATATTCGCGAGCGGTATAAGTTAGTTTCTGA
AGTGGAACTGATTGCTGGAATGCATTTTCCGGAAAGCTACCCAGAAGCCAAGCAGGCGCGACGCACCGCCATTTTTCATG
AATTCTTCTTGTACCAACTGCAATTGCAGGCGATTAAACAAGCAGACCGCCATGTTGAAAATGGCTTAGCACTGCCTTAT
CAAAACGCAGCCCTCAAGGAATTTATTAAGACATTACCGTTTGATTTAACGGATGCTCAAAAGCGGGTGGTCAACGAAAT
TTGTTTAGACCTTAAGGCACCGGCACATATGAACCGTCTTTTACAAGGGGATGTTGGGTCTGGGAAGACGATTGTCGCGG
CGATTGCGATGTTTGCTGCGGTGACGGCCGGTTTCCAAGCGGCCTTAATGGTGCCCACCGAAATTTTGGCGGAACAACAT
TATCAGAGCCTACAAAAGCTTTATGCACCAATGAATGTGACGGTTGGGTTACTAACTGGTTCGACAACCGCCAAGGAGCG
CCGGACGTTGTTGGCGGATATTGAATCCGGTCGGATCAATATCATTGTCGGAACGCACGCACTTATTCAAGATGCCGTGG
TTTACCACAAGTTAGGCTTTGCCGTCATCGATGAACAACATCGATTTGGGGTCAATCAACGGCGCGTGCTACGTGAAAAA
GGCTTGCAGCCTGATATGCTGGCAATGACAGCGACACCGATTCCGCGGACCTTGGCAATTACCGCCTATGGCGAAATGGA
TGTTTCGACCATCGATGAGTTACCTAAAGGTCGGATTCCAATTGAAACCAGTTGGGTGCGTAGTAACCAGGTTGAACAAG
CGCTCTCGTTTGTTCAAAAACAATTGGCTGACAACTCGCAAGTTTTTGCGATTACGCCGTTAATTGCGGAGTCGGAACAA
ATGGATCTCAAAAATGCGGAAGAAATCTACGCGACTTTGGCGGATCGGTTTGAGCCGCAGTACCATGTGGCGCTATTACA
CGGTAAGTTGAAGGATGACGAGAAAAACCGGATTATGACGGCTTTTTCAAATAACGAGATTCAACTACTGGTTTCAACGA
CCGTCGTTGAAGTCGGGGTCGATGTGCCTAATGCGACCGTGATGATGATTTTCGATGCTGACCGGTTTGGCTTAGCCCAA
CTTCATCAATTGCGTGGCCGGGTTGGTCGGGGCAAGAAAAAGGCCTACTGTCTATTGATTGCCGATCCTAAGAATCAACA
AGGTGTAGATCGAATGACGATCATGACCGAAACGACCAACGGTTTTGTTGTTGCGCAAAAAGATTTGGAATTACGAGGCC
CTGGTGAGGTCTTTGGCGATCGGCAATCGGGATTACCAGTCTTCAAGGTTGGTGATCCAGTCGCTGATTTTGCCAGCTTA
CAGGTCGCACAACAAGAAGTACAAAAAATCTTCACGGTTGATCCTACTTTTAGCCAACCGGCGTACGCGCCTTTAAAAGC
GTATCTCGCACAACAAAAACAAAACTATCAAACATTAGATTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(12-162)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(598-671)

Helicase conserved C-terminal domain (Helicase_C)

(463-571)

DEAD/DEAH box helicase (DEAD)

(257-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

51.335

99.118

0.509
  recG/mmsA Streptococcus pneumoniae R36A

51.335

99.118

0.509
  recG Bacillus subtilis subsp. subtilis str. 168

49.321

97.5

0.481