Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ABVR75_RS03715 Genome accession   NZ_CP159464
Coordinates   710017..710745 (+) Length   242 a.a.
NCBI ID   WP_025015895.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain CBA3649     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 705017..715745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR75_RS03695 (ABVR75_03695) - 706936..707904 (+) 969 WP_011374334.1 HD domain-containing protein -
  ABVR75_RS03700 (ABVR75_03700) - 707965..708873 (-) 909 WP_052006198.1 peptidylprolyl isomerase PrsA -
  ABVR75_RS03705 (ABVR75_03705) - 709039..709365 (-) 327 WP_101377764.1 YtxH domain-containing protein -
  ABVR75_RS03710 (ABVR75_03710) - 709368..709796 (-) 429 WP_011374337.1 HIT family protein -
  ABVR75_RS03715 (ABVR75_03715) pptA 710017..710745 (+) 729 WP_025015895.1 ABC transporter ATP-binding protein Regulator
  ABVR75_RS03720 (ABVR75_03720) - 710745..711947 (+) 1203 WP_051524260.1 ABC transporter permease -
  ABVR75_RS03725 (ABVR75_03725) - 712080..712874 (+) 795 WP_011374340.1 phosphotransferase family protein -
  ABVR75_RS03730 (ABVR75_03730) trmB 713079..713720 (+) 642 WP_025015893.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ABVR75_RS03735 (ABVR75_03735) - 713794..714120 (-) 327 WP_011374342.1 hypothetical protein -
  ABVR75_RS03740 (ABVR75_03740) - 714243..714563 (+) 321 WP_011374343.1 thioredoxin family protein -
  ABVR75_RS03745 (ABVR75_03745) ytpR 714582..715211 (+) 630 WP_096585258.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26958.29 Da        Isoelectric Point: 5.2951

>NTDB_id=911545 ABVR75_RS03715 WP_025015895.1 710017..710745(+) (pptA) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MSLEIKQLTGGYAHVPVLQEVSFTVPNQQVVGLIGLNGAGKSTTIKHIIGLLTPQKGTITLNGVTLQSNPDQYRQSMAYV
PETPVLYPELTLREHLELTMMAYDLDFEKTWAKAMVLLKKFRLDNKLDWFPVHFSKGMRQKVMIVNAFMTDADLFIIDEP
FTGLDPLAIHDLLDIIADKKAAGAAILMSTHILATAQQYADSFVLLNQGKVRTTGTLEELKAEFNMADANLDDIYLQMTK
EG

Nucleotide


Download         Length: 729 bp        

>NTDB_id=911545 ABVR75_RS03715 WP_025015895.1 710017..710745(+) (pptA) [Latilactobacillus sakei subsp. sakei strain CBA3649]
ATGAGTTTAGAAATTAAGCAATTAACGGGTGGTTACGCCCACGTACCAGTGCTCCAAGAAGTGAGTTTTACAGTTCCCAA
TCAACAGGTTGTCGGCTTGATTGGCTTAAATGGGGCTGGTAAATCAACGACCATTAAACATATTATCGGATTATTAACGC
CACAAAAGGGTACGATTACGCTCAATGGTGTCACGTTGCAATCCAATCCGGATCAATACCGCCAAAGCATGGCTTACGTG
CCGGAAACGCCAGTTCTTTACCCCGAGTTAACATTACGGGAACATCTAGAACTAACGATGATGGCTTACGATTTAGATTT
TGAGAAGACTTGGGCTAAAGCGATGGTGTTATTGAAGAAGTTCCGACTCGACAATAAGTTGGACTGGTTCCCAGTTCATT
TTTCAAAAGGGATGCGTCAAAAAGTGATGATTGTCAACGCCTTTATGACTGATGCCGATTTATTCATCATTGATGAACCT
TTTACAGGTCTTGATCCACTCGCCATTCACGATTTATTGGACATTATTGCTGATAAAAAGGCGGCGGGGGCGGCTATTTT
GATGTCGACCCATATTTTGGCCACGGCGCAACAATACGCCGATTCTTTTGTCCTATTGAATCAAGGCAAGGTCCGAACAA
CTGGGACGCTTGAAGAACTGAAAGCAGAATTTAACATGGCAGATGCAAACTTAGATGATATCTATTTGCAAATGACGAAA
GAAGGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(18-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

58.403

98.347

0.574
  pptA Streptococcus thermophilus LMD-9

57.143

98.347

0.562