Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   U0450_RS02960 Genome accession   NZ_CP139863
Coordinates   588474..589205 (-) Length   243 a.a.
NCBI ID   WP_000889956.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P2112     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 583474..594205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0450_RS02930 blpC 584022..584177 (+) 156 WP_061450964.1 quorum-sensing system pheromone BlpC -
  U0450_RS02935 - 584221..585561 (-) 1341 WP_127244994.1 sensor histidine kinase -
  U0450_RS02940 comE/blpR 585575..586312 (-) 738 WP_001219126.1 response regulator transcription factor Regulator
  U0450_RS02945 - 586317..586655 (-) 339 WP_050115203.1 LytTR family DNA-binding domain-containing protein -
  U0450_RS02950 - 586931..587260 (+) 330 WP_000132572.1 hypothetical protein -
  U0450_RS02955 - 587428..588477 (-) 1050 WP_127244993.1 ABC transporter permease -
  U0450_RS02960 pptA 588474..589205 (-) 732 WP_000889956.1 ABC transporter ATP-binding protein Regulator
  U0450_RS02965 - 589273..589683 (+) 411 WP_001278322.1 HIT family protein -
  U0450_RS02970 - 589693..589980 (+) 288 WP_000777753.1 hypothetical protein -
  U0450_RS02975 dnaJ 590314..591441 (-) 1128 WP_001066300.1 molecular chaperone DnaJ -
  U0450_RS02980 - 591843..592199 (-) 357 WP_000114430.1 hypothetical protein -
  U0450_RS02985 dnaK 592201..594024 (-) 1824 WP_000034662.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27111.62 Da        Isoelectric Point: 4.7848

>NTDB_id=911545 U0450_RS02960 WP_000889956.1 588474..589205(-) (pptA) [Streptococcus pneumoniae strain 15P2112]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFNMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=911545 U0450_RS02960 WP_000889956.1 588474..589205(-) (pptA) [Streptococcus pneumoniae strain 15P2112]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTCCCTGTCTTGAAAGATGTGTCTTTTACTGTTGAAAGTGG
GCAGTTGGTTGGTTTGATTGGTCTCAATGGTGCTGGGAAATCGACGACGATTAATGAGATTATCGGTCTGTTGACACCTT
ATAGTGGTTCCATCAATATCAATGGCCTGACCCTGCAAGAAGATGCGACTAGTTACCGCAAGCAAATTGGCTACATTCCT
GAGACACCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCCATGGCTTATGGTATTGAGCAGAA
AGTGGCTTTTGAGCGAGTAGAGCCCTTGTTAAAAATGTTCCGTCTGGACCAGAAATTAGACTGGTTTCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTAGATCCGAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTGGATCCGCTGGCGATTGCAGACTTGATTCAGCTTTTGGAAGTGGAAAAGCAAAAGGGCAAGTCCATTCTTAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTTATTCTTCATAAGGGAGAGGTGCGTGCCAAGG
GAAATCTCCTGCAACTGCGCGAAGCCTTTAACATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAACTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712